Guide to the Human Genome
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Name: PCDH7 Sequence: fasta or formatted (1072aa) NCBI GI: 14589933
Description:

protocadherin 7 isoform b precursor

Referenced in:

Cadherins and Related Proteins

Other entries for this name:
alt prot [1069aa] protocadherin 7 isoform a precursor
alt prot [1200aa] protocadherin 7 isoform c precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         63           3
 C cysteine            0.9         10           2
 D aspartate           7.6         82           2
 E glutamate           5.6         60           2
 F phenylalanine       3.0         32           2
 G glycine             8.4         90           4
 H histidine           1.2         13           1
 I isoleucine          5.1         55           2
 K lysine              4.9         53           3
 L leucine             7.8         84           3
 M methionine          1.4         15           1
 N asparagine          5.6         60           3
 P proline             6.0         64           2
 Q glutamine           4.0         43           2
 R arginine            5.3         57           2
 S serine              8.7         93           3
 T threonine           6.2         66           3
 V valine              9.1         98           2
 W tryptophan          0.4          4           1
 Y tyrosine            2.8         30           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protocadherin 7 isoform b precursor 
PCDH7                 0.988   protocadherin 7 isoform a precursor 
PCDH7                 0.917   protocadherin 7 isoform c precursor 
PCDH1                 0.448   protocadherin 1 isoform 1 precursor 
PCDH1                 0.447   protocadherin 1 isoform 2 precursor 
PCDH9                 0.318   protocadherin 9 isoform 2 precursor 
PCDH9                 0.318   protocadherin 9 isoform 1 precursor 
PCDH11Y               0.276   protocadherin 11 Y-linked isoform c 
PCDH11Y               0.276   protocadherin 11 Y-linked isoform b 
PCDH11Y               0.276   protocadherin 11 Y-linked isoform a 
PCDH11X               0.275   protocadherin 11 X-linked isoform a precursor 
PCDH11X               0.275   protocadherin 11 X-linked isoform d 
PCDH11X               0.275   protocadherin 11 X-linked isoform c 
PCDH11X               0.275   protocadherin 11 X-linked isoform b precursor 
PCDH20                0.180   protocadherin 20 
PCDHGB4               0.148   protocadherin gamma subfamily B, 4 isoform 2 precurs...
PCDHGB4               0.148   protocadherin gamma subfamily B, 4 isoform 1 precurs...
PCDHGB7               0.145   protocadherin gamma subfamily B, 7 isoform 2 precurs...
PCDHGB7               0.145   protocadherin gamma subfamily B, 7 isoform 1 precurs...
PCDHGC5               0.141   protocadherin gamma subfamily C, 5 isoform 2 precurs...
PCDHGC5               0.141   protocadherin gamma subfamily C, 5 isoform 1 precurs...
PCDHGB6               0.141   protocadherin gamma subfamily B, 6 isoform 1 precurs...
PCDHGB6               0.141   protocadherin gamma subfamily B, 6 isoform 2 precurs...
DCHS1                 0.140   dachsous 1 precursor 
PCDHGB5               0.139   protocadherin gamma subfamily B, 5 isoform 2 precurs...
PCDHGB5               0.139   protocadherin gamma subfamily B, 5 isoform 1 precurs...
PCDHA3                0.138   protocadherin alpha 3 isoform 1 precursor 
PCDHA3                0.138   protocadherin alpha 3 isoform 2 precursor 
PCDHB7                0.136   protocadherin beta 7 precursor 
PCDH10                0.136   protocadherin 10 isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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