Guide to the Human Genome
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Name: CBLN3 Sequence: fasta or formatted (205aa) NCBI GI: 89886217
Description:

cerebellin 3 precursor

Referenced in:

Cerebellum

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         21           3
 C cysteine            1.0          2           1
 D aspartate           2.9          6           1
 E glutamate           4.9         10           1
 F phenylalanine       4.9         10           1
 G glycine            13.7         28           3
 H histidine           2.9          6           3
 I isoleucine          1.5          3           1
 K lysine              1.5          3           1
 L leucine            12.2         25           2
 M methionine          1.0          2           1
 N asparagine          2.9          6           1
 P proline             8.3         17           2
 Q glutamine           2.0          4           1
 R arginine            5.9         12           2
 S serine              7.3         15           2
 T threonine           2.9          6           1
 V valine             10.2         21           2
 W tryptophan          2.0          4           1
 Y tyrosine            2.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cerebellin 3 precursor 
CBLN1                 0.480   cerebellin 1 precursor 
CBLN2                 0.447   cerebellin 2 precursor 
CBLN4                 0.427   cerebellin 4 precursor 
CAPRIN2               0.167   C1q domain containing 1 isoform 1 
CAPRIN2               0.167   C1q domain containing 1 isoform 3 
CAPRIN2               0.167   C1q domain containing 1 isoform 2 
C1QL4                 0.164   complement component 1, q subcomponent-like 4 
C1QL1                 0.136   complement component 1, q subcomponent-like 1 
C1QL3                 0.131   complement component 1, q subcomponent-like 3 
C1QL2                 0.121   complement component 1, q subcomponent-like 2 [Homo...
C1QTNF3               0.109   C1q and tumor necrosis factor related protein 3 isof...
C1QTNF3               0.109   C1q and tumor necrosis factor related protein 3 isof...
C1QTNF5               0.106   C1q and tumor necrosis factor related protein 5 prec...
C1QTNF4               0.093   C1q and tumor necrosis factor related protein 4 [Ho...
C1QC                  0.083   complement component 1, q subcomponent, C chain prec...
C1QC                  0.083   complement component 1, q subcomponent, C chain pre...
COL8A1                0.081   alpha 1 type VIII collagen precursor 
COL8A1                0.081   alpha 1 type VIII collagen precursor 
COL8A2                0.081   collagen, type VIII, alpha 2 
C1QTNF8               0.076   C1q and tumor necrosis factor related protein 8 [Ho...
C1QTNF9B              0.076   C1q and tumor necrosis factor related protein 9B [Ho...
C1QTNF9               0.076   C1q and tumor necrosis factor related protein 9 [Hom...
C1QTNF6               0.076   C1q and tumor necrosis factor related protein 6 [Hom...
C1QTNF6               0.076   C1q and tumor necrosis factor related protein 6 [Hom...
C1QB                  0.076   complement component 1, q subcomponent, B chain prec...
COL10A1               0.071   type X collagen alpha 1 precursor 
C1QTNF2               0.071   C1q and tumor necrosis factor related protein 2 [Hom...
C1QA                  0.063   complement component 1, q subcomponent, A chain precu...
ADIPOQ                0.058   adiponectin precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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