Guide to the Human Genome
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Name: CBLN2 Sequence: fasta or formatted (224aa) NCBI GI: 32698861
Description:

cerebellin 2 precursor

Referenced in:

Cerebellum
Complement

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         17           2
 C cysteine            2.7          6           2
 D aspartate           3.6          8           1
 E glutamate           4.0          9           1
 F phenylalanine       4.5         10           1
 G glycine             9.8         22           2
 H histidine           1.8          4           1
 I isoleucine          3.6          8           1
 K lysine              3.1          7           1
 L leucine            11.6         26           6
 M methionine          3.6          8           2
 N asparagine          4.0          9           1
 P proline             5.4         12           1
 Q glutamine           3.1          7           1
 R arginine            6.2         14           2
 S serine              9.8         22           2
 T threonine           4.0          9           1
 V valine              8.9         20           2
 W tryptophan          0.4          1           1
 Y tyrosine            2.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cerebellin 2 precursor 
CBLN1                 0.645   cerebellin 1 precursor 
CBLN4                 0.605   cerebellin 4 precursor 
CBLN3                 0.418   cerebellin 3 precursor 
CAPRIN2               0.163   C1q domain containing 1 isoform 1 
CAPRIN2               0.163   C1q domain containing 1 isoform 3 
CAPRIN2               0.163   C1q domain containing 1 isoform 2 
C1QL2                 0.151   complement component 1, q subcomponent-like 2 [Homo...
C1QL4                 0.147   complement component 1, q subcomponent-like 4 
C1QL3                 0.135   complement component 1, q subcomponent-like 3 
C1QL1                 0.130   complement component 1, q subcomponent-like 1 
C1QTNF3               0.125   C1q and tumor necrosis factor related protein 3 isof...
C1QTNF3               0.125   C1q and tumor necrosis factor related protein 3 isof...
C1QTNF4               0.092   C1q and tumor necrosis factor related protein 4 [Ho...
C1QTNF9               0.090   C1q and tumor necrosis factor related protein 9 [Hom...
C1QTNF5               0.085   C1q and tumor necrosis factor related protein 5 prec...
C1QB                  0.080   complement component 1, q subcomponent, B chain prec...
C1QTNF9B              0.076   C1q and tumor necrosis factor related protein 9B [Ho...
C1QTNF7               0.073   C1q and tumor necrosis factor related protein 7 isof...
C1QTNF7               0.073   C1q and tumor necrosis factor related protein 7 iso...
C1QTNF7               0.073   C1q and tumor necrosis factor related protein 7 iso...
COL10A1               0.071   type X collagen alpha 1 precursor 
C1QTNF2               0.071   C1q and tumor necrosis factor related protein 2 [Hom...
C1QTNF1               0.066   C1q and tumor necrosis factor related protein 1 isof...
C1QTNF1               0.066   C1q and tumor necrosis factor related protein 1 [Hom...
C1QTNF1               0.066   C1q and tumor necrosis factor related protein 1 isof...
C1QC                  0.064   complement component 1, q subcomponent, C chain prec...
C1QC                  0.064   complement component 1, q subcomponent, C chain pre...
COL8A2                0.064   collagen, type VIII, alpha 2 
COL8A1                0.059   alpha 1 type VIII collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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