Guide to the Human Genome
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Name: RAB4B Sequence: fasta or formatted (213aa) NCBI GI: 82659107
Description:

ras-related GTP-binding protein 4b

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         19           2
 C cysteine            2.3          5           1
 D aspartate           4.7         10           1
 E glutamate           7.5         16           2
 F phenylalanine       5.2         11           1
 G glycine             8.0         17           2
 H histidine           0.9          2           1
 I isoleucine          4.7         10           1
 K lysine              4.7         10           2
 L leucine             9.9         21           2
 M methionine          1.4          3           1
 N asparagine          4.2          9           1
 P proline             2.8          6           1
 Q glutamine           4.7         10           1
 R arginine            6.6         14           1
 S serine              7.0         15           1
 T threonine           6.6         14           1
 V valine              6.1         13           2
 W tryptophan          0.9          2           1
 Y tyrosine            2.8          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ras-related GTP-binding protein 4b 
RAB4A                 0.880   RAB4A, member RAS oncogene family 
RAB14                 0.566   GTPase Rab14 
RAB2B                 0.481   RAB2B protein isoform 1 
RAB2A                 0.471   RAB2A, member RAS oncogene family 
RAB11B                0.382   RAB11B, member RAS oncogene family 
RAB11A                0.379   Ras-related protein Rab-11A 
RAB8B                 0.367   RAB8B, member RAS oncogene family 
RAB25                 0.364   RAB25 
RAB1A                 0.357   RAB1A, member RAS oncogene family isoform 1 
RAB43                 0.357   RAB43 protein 
RAB1B                 0.354   RAB1B, member RAS oncogene family 
RAB2B                 0.352   RAB2B protein isoform 2 
RAB13                 0.349   RAB13, member RAS oncogene family 
RAB30                 0.347   RAB30, member RAS oncogene family 
RAB8A                 0.347   mel transforming oncogene 
LOC100131294          0.342   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.342   PREDICTED: similar to hCG24991 
LOC100131294          0.342   PREDICTED: similar to hCG24991 
RAB39B                0.339   RAB39B, member RAS oncogene family 
RAB10                 0.332   ras-related GTP-binding protein RAB10 
RAB37                 0.317   RAB37, member RAS oncogene family isoform 2 
RAB19                 0.314   RAB19, member RAS oncogene family 
RAB39                 0.312   RAB39, member RAS oncogene family 
RAB37                 0.312   RAB37, member RAS oncogene family isoform 3 
RAB5C                 0.302   RAB5C, member RAS oncogene family isoform a 
RAB5C                 0.302   RAB5C, member RAS oncogene family isoform b 
RAB12                 0.302   RAB12, member RAS oncogene family 
RAB5A                 0.299   RAB5A, member RAS oncogene family 
RAB35                 0.299   RAB35, member RAS oncogene family 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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