Guide to the Human Genome
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Name: RAB5C Sequence: fasta or formatted (216aa) NCBI GI: 41393545
Description:

RAB5C, member RAS oncogene family isoform b

Referenced in:

Rab

Other entries for this name:
alt mRNA [216aa] RAB5C, member RAS oncogene family isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.4         31           2
 C cysteine            1.9          4           2
 D aspartate           4.2          9           2
 E glutamate           5.6         12           1
 F phenylalanine       4.2          9           1
 G glycine             6.9         15           2
 H histidine           0.9          2           1
 I isoleucine          4.2          9           1
 K lysine              6.0         13           2
 L leucine             6.9         15           2
 M methionine          2.3          5           1
 N asparagine          6.9         15           2
 P proline             3.7          8           1
 Q glutamine           6.0         13           1
 R arginine            5.1         11           1
 S serine              5.6         12           2
 T threonine           5.6         12           2
 V valine              6.0         13           2
 W tryptophan          0.9          2           1
 Y tyrosine            2.8          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB5C, member RAS oncogene family isoform b 
RAB5C                 1.000   RAB5C, member RAS oncogene family isoform a 
RAB5A                 0.853   RAB5A, member RAS oncogene family 
RAB5B                 0.830   RAB5B, member RAS oncogene family 
RAB22A                0.400   RAS-related protein RAB-22A 
RAB31                 0.383   RAB31, member RAS oncogene family 
RAB17                 0.371   RAB17, member RAS oncogene family 
RAB21                 0.356   RAB21, member RAS oncogene family 
RAB6B                 0.354   RAB6B, member RAS oncogene family 
RAB6A                 0.346   RAB6A, member RAS oncogene family isoform a 
RAB1A                 0.344   RAB1A, member RAS oncogene family isoform 1 
RAB6A                 0.342   RAB6A, member RAS oncogene family isoform b 
RAB1B                 0.342   RAB1B, member RAS oncogene family 
RAB11B                0.332   RAB11B, member RAS oncogene family 
RAB11A                0.324   Ras-related protein Rab-11A 
RAB25                 0.324   RAB25 
RAB2A                 0.322   RAB2A, member RAS oncogene family 
RAB2B                 0.319   RAB2B protein isoform 1 
LOC150786             0.307   RAB6C-like 
RAB13                 0.307   RAB13, member RAS oncogene family 
RAB6C                 0.305   RAB6C, member RAS oncogene family 
RAB37                 0.302   RAB37, member RAS oncogene family isoform 3 
RAB14                 0.302   GTPase Rab14 
LOC100131294          0.300   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.300   PREDICTED: similar to hCG24991 
LOC100131294          0.300   PREDICTED: similar to hCG24991 
RAB41                 0.300   RAB41, member RAS oncogene family 
RAB19                 0.297   RAB19, member RAS oncogene family 
RAB8B                 0.297   RAB8B, member RAS oncogene family 
RAB4B                 0.297   ras-related GTP-binding protein 4b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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