Guide to the Human Genome
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Name: FAM190B Sequence: fasta or formatted (834aa) NCBI GI: 80861486
Description:

granule cell antiserum positive 14

Referenced in:

Cerebellum

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2         27           2
 C cysteine            1.4         12           1
 D aspartate           6.8         57           3
 E glutamate           6.4         53           2
 F phenylalanine       3.2         27           2
 G glycine             6.1         51           2
 H histidine           3.2         27           3
 I isoleucine          3.4         28           2
 K lysine              7.2         60           3
 L leucine             7.7         64           2
 M methionine          2.5         21           1
 N asparagine          6.1         51           2
 P proline             6.7         56           2
 Q glutamine           5.0         42           2
 R arginine            5.0         42           2
 S serine             12.6        105           3
 T threonine           6.0         50           2
 V valine              3.7         31           1
 W tryptophan          0.8          7           1
 Y tyrosine            2.8         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   granule cell antiserum positive 14 
FAM190A               0.040   KIAA1680 protein isoform 1 
FAM190A               0.033   KIAA1680 protein isoform 2 
DSPP                  0.014   dentin sialophosphoprotein preproprotein 
RSF1                  0.009   remodeling and spacing factor 1 
RPGRIP1               0.008   retinitis pigmentosa GTPase regulator interacting p...
SPANXN2               0.008   SPANX-N2 protein 
ARID1B                0.008   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
NUFIP2                0.007   nuclear fragile X mental retardation protein interac...
KIAA1430              0.007   hypothetical protein LOC57587 
ACRC                  0.007   ACRC protein 
BAZ2B                 0.007   bromodomain adjacent to zinc finger domain, 2B [Homo...
NAV3                  0.007   neuron navigator 3 
PALM2                 0.006   paralemmin 2 isoform b 
PALM2                 0.006   paralemmin 2 isoform a 
PALM2-AKAP2           0.006   PALM2-AKAP2 protein isoform 2 
PALM2-AKAP2           0.006   PALM2-AKAP2 protein isoform 1 
EDEM3                 0.006   ER degradation enhancer, mannosidase alpha-like 3 [...
TMEM200A              0.006   transmembrane protein 200A 
CYLC1                 0.006   cylicin, basic protein of sperm head cytoskeleton 1...
ETAA1                 0.006   ETAA16 protein 
ESF1                  0.006   ABT1-associated protein 
RBM12B                0.005   RNA binding motif protein 12B 
TTLL7                 0.005   tubulin tyrosine ligase-like family, member 7 
SSFA2                 0.005   sperm specific antigen 2 isoform 1 
SSFA2                 0.005   sperm specific antigen 2 isoform 2 
MACROD2               0.005   MACRO domain containing 2 isoform 1 
MACROD2               0.005   MACRO domain containing 2 isoform 2 
BOD1L                 0.005   biorientation of chromosomes in cell division 1-like...
ANKRD11               0.005   ankyrin repeat domain 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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