Guide to the Human Genome
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Name: TLR7 Sequence: fasta or formatted (1049aa) NCBI GI: 7706093
Description:

toll-like receptor 7

Referenced in:

Toll-like Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6         38           1
 C cysteine            2.6         27           2
 D aspartate           4.8         50           2
 E glutamate           4.9         51           2
 F phenylalanine       5.7         60           2
 G glycine             2.8         29           2
 H histidine           2.6         27           2
 I isoleucine          5.4         57           2
 K lysine              7.1         75           2
 L leucine            15.6        164           3
 M methionine          1.8         19           2
 N asparagine          7.6         80           2
 P proline             4.4         46           2
 Q glutamine           4.3         45           1
 R arginine            3.5         37           1
 S serine              8.8         92           3
 T threonine           4.7         49           2
 V valine              5.1         54           1
 W tryptophan          1.3         14           2
 Y tyrosine            3.3         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   toll-like receptor 7 
TLR8                  0.373   toll-like receptor 8 
TLR9                  0.259   toll-like receptor 9 isoform A precursor 
TLR3                  0.082   toll-like receptor 3 
TLR5                  0.080   toll-like receptor 5 
TLR2                  0.069   toll-like receptor 2 
TLR4                  0.059   toll-like receptor 4 precursor 
TLR10                 0.052   toll-like receptor 10 precursor 
TLR10                 0.052   toll-like receptor 10 precursor 
TLR1                  0.051   toll-like receptor 1 
TLR6                  0.050   toll-like receptor 6 
SLIT1                 0.047   slit homolog 1 
SLIT3                 0.047   slit homolog 3 
LRIG2                 0.043   leucine-rich repeats and immunoglobulin-like domains ...
CPN2                  0.042   carboxypeptidase N, polypeptide 2, 83kD 
LGR6                  0.039   leucine-rich repeat-containing G protein-coupled rec...
LRIG3                 0.039   leucine-rich repeats and immunoglobulin-like domains...
DCN                   0.038   decorin isoform a preproprotein 
DCN                   0.038   decorin isoform a preproprotein 
LGR4                  0.037   leucine-rich repeat-containing G protein-coupled re...
LRIG3                 0.037   leucine-rich repeats and immunoglobulin-like domain...
ECM2                  0.037   extracellular matrix protein 2 precursor 
FLRT1                 0.036   fibronectin leucine rich transmembrane protein 1 [Ho...
SLIT2                 0.035   slit homolog 2 
LGR5                  0.035   leucine-rich repeat-containing G protein-coupled rece...
IGFALS                0.035   insulin-like growth factor binding protein, acid la...
IGFALS                0.035   insulin-like growth factor binding protein, acid labi...
ASPN                  0.034   asporin 
LRIG1                 0.034   leucine-rich repeats and immunoglobulin-like domains...
FLRT2                 0.034   fibronectin leucine rich transmembrane protein 2 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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