Guide to the Human Genome
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Name: ASPN Sequence: fasta or formatted (380aa) NCBI GI: 41350214
Description:

asporin

Referenced in:

Protein Composition and Structure
Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         14           1
 C cysteine            1.8          7           1
 D aspartate           7.4         28          14
 E glutamate           5.8         22           1
 F phenylalanine       5.5         21           2
 G glycine             4.2         16           1
 H histidine           2.9         11           1
 I isoleucine          5.8         22           2
 K lysine              8.7         33           2
 L leucine            13.4         51           3
 M methionine          3.2         12           2
 N asparagine          7.4         28           3
 P proline             6.3         24           2
 Q glutamine           2.1          8           1
 R arginine            3.9         15           2
 S serine              6.3         24           1
 T threonine           4.5         17           2
 V valine              4.5         17           2
 W tryptophan          0.3          1           1
 Y tyrosine            2.4          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   asporin 
BGN                   0.498   biglycan preproprotein 
DCN                   0.459   decorin isoform a preproprotein 
DCN                   0.459   decorin isoform a preproprotein 
DCN                   0.250   decorin isoform b precursor 
DCN                   0.202   decorin isoform c precursor 
LUM                   0.163   lumican precursor 
ECM2                  0.154   extracellular matrix protein 2 precursor 
OMD                   0.152   osteomodulin 
PRELP                 0.150   proline arginine-rich end leucine-rich repeat protei...
PRELP                 0.150   proline arginine-rich end leucine-rich repeat protein...
FLRT1                 0.147   fibronectin leucine rich transmembrane protein 1 [Ho...
KERA                  0.139   keratocan 
FLRT3                 0.134   fibronectin leucine rich transmembrane protein 3 pre...
FLRT3                 0.134   fibronectin leucine rich transmembrane protein 3 prec...
PODNL1                0.132   podocan-like 1 isoform 2 
PODNL1                0.132   podocan-like 1 isoform 1 
FMOD                  0.130   fibromodulin precursor 
FLRT2                 0.123   fibronectin leucine rich transmembrane protein 2 [Hom...
PODN                  0.117   podocan 
LGR4                  0.115   leucine-rich repeat-containing G protein-coupled re...
LRRTM3                0.111   leucine rich repeat transmembrane neuronal 3 
LRIG1                 0.111   leucine-rich repeats and immunoglobulin-like domains...
CHAD                  0.109   chondroadherin precursor 
SLIT1                 0.104   slit homolog 1 
LRRC70                0.104   synleurin 
LRRC15                0.103   leucine rich repeat containing 15 isoform a 
LRRC15                0.103   leucine rich repeat containing 15 isoform b 
LRRTM4                0.101   leucine rich repeat transmembrane neuronal 4 isofor...
LRRTM4                0.101   leucine rich repeat transmembrane neuronal 4 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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