Guide to the Human Genome
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Name: PIN1 Sequence: fasta or formatted (163aa) NCBI GI: 5453898
Description:

protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1

Referenced in:

Peptidylprolyl Isomerases
Spindle, M phase, and Meiosis
WW Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         10           1
 C cysteine            1.2          2           1
 D aspartate           3.7          6           1
 E glutamate           9.2         15           2
 F phenylalanine       4.3          7           1
 G glycine             9.2         15           2
 H histidine           2.5          4           1
 I isoleucine          4.9          8           2
 K lysine              6.1         10           1
 L leucine             5.5          9           2
 M methionine          2.5          4           1
 N asparagine          3.1          5           1
 P proline             4.3          7           2
 Q glutamine           4.9          8           1
 R arginine            8.6         14           2
 S serine             14.1         23           3
 T threonine           3.7          6           1
 V valine              2.5          4           1
 W tryptophan          1.8          3           1
 Y tyrosine            1.8          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein (peptidyl-prolyl cis/trans isomerase) NIMA-in... 
PIN4                  0.094   protein (peptidyl-prolyl cis/trans isomerase) NIMA-i...
SMURF2                0.075   SMAD specific E3 ubiquitin protein ligase 2 
WWP2                  0.072   WW domain containing E3 ubiquitin protein ligase 2 i...
ITCH                  0.068   itchy homolog E3 ubiquitin protein ligase 
HECW2                 0.065   HECT, C2 and WW domain containing E3 ubiquitin prote...
HECW1                 0.065   NEDD4-like ubiquitin-protein ligase 1 
WWP1                  0.065   WW domain containing E3 ubiquitin protein ligase 1 [...
WWOX                  0.062   WW domain-containing oxidoreductase isoform 1 
WWOX                  0.062   WW domain-containing oxidoreductase isoform 2 
PCIF1                 0.059   phosphorylated CTD interacting factor 1 
NEDD4L                0.059   neural precursor cell expressed, developmentally do...
NEDD4L                0.059   neural precursor cell expressed, developmentally dow...
NEDD4L                0.059   neural precursor cell expressed, developmentally do...
NEDD4L                0.059   neural precursor cell expressed, developmentally do...
NEDD4L                0.059   neural precursor cell expressed, developmentally do...
NEDD4L                0.059   neural precursor cell expressed, developmentally do...
NEDD4L                0.059   neural precursor cell expressed, developmentally do...
NEDD4L                0.059   neural precursor cell expressed, developmentally do...
NEDD4L                0.059   neural precursor cell expressed, developmentally do...
GAS7                  0.059   growth arrest-specific 7 isoform d 
GAS7                  0.059   growth arrest-specific 7 isoform c 
GAS7                  0.059   growth arrest-specific 7 isoform b 
NEDD4                 0.055   neural precursor cell expressed, developmentally do...
NEDD4                 0.055   neural precursor cell expressed, developmentally do...
WWP2                  0.049   WW domain containing E3 ubiquitin protein ligase 2 i...
WWC2                  0.042   WW and C2 domain containing 2 
WWTR1                 0.039   WW domain containing transcription regulator 1 [Homo...
WWP2                  0.036   WW domain containing E3 ubiquitin protein ligase 2 i...
YAP1                  0.033   Yes-associated protein 1, 65kDa isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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