Guide to the Human Genome
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Name: OR52W1 Sequence: fasta or formatted (320aa) NCBI GI: 52353272
Description:

olfactory receptor, family 52, subfamily W, member 1

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         41           3
 C cysteine            1.9          6           1
 D aspartate           1.6          5           1
 E glutamate           1.9          6           1
 F phenylalanine       5.3         17           2
 G glycine             7.2         23           1
 H histidine           4.4         14           2
 I isoleucine          5.9         19           1
 K lysine              2.5          8           1
 L leucine            17.5         56           3
 M methionine          2.2          7           1
 N asparagine          2.2          7           1
 P proline             6.2         20           2
 Q glutamine           2.5          8           1
 R arginine            2.8          9           1
 S serine              4.4         14           2
 T threonine           6.9         22           1
 V valine              7.5         24           2
 W tryptophan          0.9          3           1
 Y tyrosine            3.4         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   olfactory receptor, family 52, subfamily W, member 1... 
OR52L1                0.479   olfactory receptor, family 52, subfamily L, member ...
OR52D1                0.446   olfactory receptor, family 52, subfamily D, member 1...
OR52K2                0.418   olfactory receptor, family 52, subfamily K, member 2...
OR52R1                0.417   olfactory receptor, family 52, subfamily R, member ...
OR52A5                0.417   olfactory receptor, family 52, subfamily A, member 5...
OR51L1                0.417   olfactory receptor, family 51, subfamily L, member 1...
OR52N4                0.415   olfactory receptor, family 52, subfamily N, member ...
OR52N1                0.413   olfactory receptor, family 52, subfamily N, member 1...
OR52N2                0.410   olfactory receptor, family 52, subfamily N, member 2...
OR52K1                0.408   olfactory receptor, family 52, subfamily K, member 1...
OR52M1                0.405   olfactory receptor, family 52, subfamily M, member 1...
OR52J3                0.405   olfactory receptor, family 52, subfamily J, member ...
OR52E8                0.392   olfactory receptor, family 52, subfamily E, member 8...
OR52A1                0.392   olfactory receptor, family 52, subfamily A, member ...
OR52E2                0.392   olfactory receptor, family 52, subfamily E, member 2...
OR52E4                0.389   olfactory receptor, family 52, subfamily E, member 4...
OR51G1                0.384   olfactory receptor, family 51, subfamily G, member 1...
OR52N5                0.377   olfactory receptor, family 52, subfamily N, member 5...
OR52B2                0.369   olfactory receptor, family 52, subfamily B, member 2...
OR51E2                0.368   olfactory receptor, family 51, subfamily E, member 2...
OR52H1                0.364   olfactory receptor, family 52, subfamily H, member 1...
OR51E1                0.355   olfactory receptor, family 51, subfamily E, member ...
OR52E6                0.355   olfactory receptor, family 52, subfamily E, member 6...
OR52B6                0.351   olfactory receptor, family 52, subfamily B, member ...
OR52I2                0.351   olfactory receptor, family 52, subfamily I, member 2...
OR51I1                0.346   olfactory receptor, family 51, subfamily I, member 1...
OR51G2                0.343   olfactory receptor, family 51, subfamily G, member 2...
OR51F2                0.342   olfactory receptor, family 51, subfamily F, member 2...
OR51I2                0.342   olfactory receptor, family 51, subfamily I, member 2...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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