Guide to the Human Genome
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Name: ASCL2 Sequence: fasta or formatted (193aa) NCBI GI: 4885665
Description:

achaete-scute complex homolog-like 2

Referenced in:

Notch Pathway
Helix-Loop-Helix Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.0         27           3
 C cysteine            1.6          3           1
 D aspartate           2.6          5           2
 E glutamate           5.7         11           1
 F phenylalanine       1.0          2           1
 G glycine            10.9         21           3
 H histidine           1.6          3           1
 I isoleucine          0.5          1           1
 K lysine              2.1          4           2
 L leucine             8.8         17           2
 M methionine          0.5          1           1
 N asparagine          2.1          4           1
 P proline            10.9         21           2
 Q glutamine           2.1          4           1
 R arginine           13.5         26           4
 S serine             11.4         22           3
 T threonine           3.1          6           2
 V valine              5.7         11           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   achaete-scute complex homolog-like 2 
ASCL1                 0.326   achaete-scute complex homolog 1 
ASCL5                 0.174   PREDICTED: achaete-scute complex homolog 5 (Drosoph...
ASCL5                 0.174   PREDICTED: achaete-scute complex homolog 5 (Drosoph...
ASCL5                 0.174   PREDICTED: achaete-scute complex homolog 5 
ASCL4                 0.144   achaete-scute complex-like 4 
BHLHA15               0.116   basic helix-loop-helix family, member a15 
ASCL3                 0.116   ASCL3 
NEUROG1               0.097   neurogenin 1 
NEUROG3               0.097   neurogenin 3 
ATOH7                 0.097   atonal homolog 7 
NEUROG2               0.097   neurogenin 2 
PTF1A                 0.091   pancreas specific transcription factor, 1a 
BHLHA9                0.086   PREDICTED: basic helix-loop-helix family, member a9...
BHLHA9                0.086   PREDICTED: basic helix-loop-helix family, member a9...
BHLHA9                0.086   PREDICTED: basic helix-loop-helix family, member a9...
SCXB                  0.083   scleraxis homolog B 
ATOH1                 0.083   atonal homolog 1 
SCXA                  0.083   scleraxis homolog A 
ATOH8                 0.077   atonal homolog 8 
LYL1                  0.077   lymphoblastic leukemia derived sequence 1 
HAND2                 0.075   basic helix-loop-helix transcription factor HAND2 [H...
TAL1                  0.075   T-cell acute lymphocytic leukemia 1 
MYOD1                 0.069   myogenic differentiation 1 
TCF15                 0.069   basic helix-loop-helix transcription factor 15 [Homo...
MNT                   0.064   MAX binding protein 
OLIG2                 0.064   oligodendrocyte lineage transcription factor 2 [Homo...
NHLH1                 0.064   nescient helix loop helix 1 
TAL2                  0.061   T-cell acute lymphocytic leukemia 2 
MYF6                  0.061   myogenic factor 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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