Guide to the Human Genome
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Name: C9orf150 Sequence: fasta or formatted (228aa) NCBI GI: 42822876
Description:

hypothetical protein LOC286343

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.2          5           1
 C cysteine            2.2          5           1
 D aspartate           7.5         17           2
 E glutamate           7.0         16           2
 F phenylalanine       1.3          3           1
 G glycine            10.5         24           9
 H histidine           2.2          5           1
 I isoleucine          3.5          8           1
 K lysine              3.1          7           1
 L leucine            12.7         29           2
 M methionine          1.8          4           1
 N asparagine          1.3          3           1
 P proline             5.7         13           2
 Q glutamine           2.6          6           1
 R arginine            7.0         16           1
 S serine             19.7         45           7
 T threonine           3.5          8           1
 V valine              3.5          8           1
 W tryptophan          0.4          1           1
 Y tyrosine            2.2          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC286343 
C1orf190              0.193   hypothetical protein LOC541468 
TNRC18                0.044   trinucleotide repeat containing 18 
KCNMA1                0.044   large conductance calcium-activated potassium chann...
KCNMA1                0.044   large conductance calcium-activated potassium chann...
KCNMA1                0.044   large conductance calcium-activated potassium channe...
KCNMA1                0.044   large conductance calcium-activated potassium channe...
WWC2                  0.044   WW and C2 domain containing 2 
SRRM2                 0.042   splicing coactivator subunit SRm300 
RLIM                  0.040   ring finger protein, LIM domain interacting 
RLIM                  0.040   ring finger protein, LIM domain interacting 
DACH1                 0.040   dachshund homolog 1 isoform b 
DACH1                 0.040   dachshund homolog 1 isoform a 
DACH1                 0.040   dachshund homolog 1 isoform c 
FAM89A                0.040   family with sequence similarity 89, member A 
MTHFD1L               0.040   methylenetetrahydrofolate dehydrogenase (NADP+ depen...
ZNF503                0.037   zinc finger protein 503 
GSPT1                 0.037   G1 to S phase transition 1 isoform 2 
GSPT1                 0.037   G1 to S phase transition 1 isoform 1 
CHD9                  0.035   chromodomain helicase DNA binding protein 9 
BHLHE22               0.033   basic helix-loop-helix domain containing, class B, 5...
LOC100293644          0.033   PREDICTED: hypothetical protein 
LOC100287563          0.033   PREDICTED: hypothetical protein 
LOC100287563          0.033   PREDICTED: hypothetical protein XP_002343733 
CXXC5                 0.033   CXXC finger 5 
POU2F2                0.030   POU domain, class 2, transcription factor 2 
POU4F2                0.030   Brn3b POU domain transcription factor 
HOXB3                 0.030   homeobox B3 
ANKRD17               0.028   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.028   ankyrin repeat domain protein 17 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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