YBX1 26314

Name: YBX1	Sequence: fasta or formatted (324aa)		NCBI GI: 34098946
Description: nuclease sensitive element binding protein 1		Referenced in: RNases and RNA Stability
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.0 29 2 C cysteine 0.0 0 0 D aspartate 4.0 13 1 E glutamate 8.3 27 2 F phenylalanine 2.2 7 1 G glycine 12.0 39 2 H histidine 0.6 2 1 I isoleucine 0.9 3 1 K lysine 4.9 16 2 L leucine 1.2 4 1 M methionine 1.2 4 1 N asparagine 6.5 21 2 P proline 10.8 35 2 Q glutamine 7.4 24 2 R arginine 12.0 39 4 S serine 4.6 15 2 T threonine 4.0 13 2 V valine 4.9 16 2 W tryptophan 0.3 1 1 Y tyrosine 4.9 16 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 nuclease sensitive element binding protein 1 CSDA 0.442 cold shock domain protein A isoform a CSDA 0.334 cold shock domain protein A isoform b YBX2 0.319 Y box binding protein 2 LIN28B 0.067 lin-28 homolog B LIN28 0.058 lin-28 homolog PRB3 0.038 proline-rich protein BstNI subfamily 3 precursor [H... PRB1 0.035 proline-rich protein BstNI subfamily 1 isoform 1 pre... PRH2 0.034 proline-rich protein HaeIII subfamily 2 PRH2 0.034 proline-rich protein HaeIII subfamily 2 PRB4 0.032 proline-rich protein BstNI subfamily 4 precursor [Ho... PRH1 0.031 proline-rich protein HaeIII subfamily 1 SRRM1 0.031 serine/arginine repetitive matrix 1 PRB2 0.031 proline-rich protein BstNI subfamily 2 HDGF2 0.029 hepatoma-derived growth factor-related protein 2 iso... HDGF2 0.029 hepatoma-derived growth factor-related protein 2 iso... LOC100133599 0.026 PREDICTED: hypothetical protein YLPM1 0.026 YLP motif containing 1 THRAP3 0.026 thyroid hormone receptor associated protein 3 [Homo... ARID1A 0.026 AT rich interactive domain 1A isoform a ARID1A 0.026 AT rich interactive domain 1A isoform b RBMX 0.023 RNA binding motif protein, X-linked CHD2 0.023 chromodomain helicase DNA binding protein 2 isoform... CHD2 0.023 chromodomain helicase DNA binding protein 2 isoform... CCDC55 0.021 coiled-coil domain containing 55 isoform 1 PRB1 0.021 proline-rich protein BstNI subfamily 1 isoform 2 pre... SRRM2 0.021 splicing coactivator subunit SRm300 ARID1B 0.021 AT rich interactive domain 1B (SWI1-like) isoform 2 ... ARID1B 0.021 AT rich interactive domain 1B (SWI1-like) isoform 1 ... ARID1B 0.021 AT rich interactive domain 1B (SWI1-like) isoform 3 ... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.