ARID1A 12770

Name: ARID1A	Sequence: fasta or formatted (2285aa)		NCBI GI: 21264565
Description: AT rich interactive domain 1A isoform a		Referenced in: Nonhistone Chromosomal Proteins
Other entries for this name: alt prot [2068aa] AT rich interactive domain 1A isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.4 193 11 C cysteine 0.7 16 1 D aspartate 3.4 78 2 E glutamate 4.5 102 7 F phenylalanine 1.8 42 1 G glycine 10.8 247 7 H histidine 2.0 45 2 I isoleucine 2.4 55 1 K lysine 3.3 75 2 L leucine 6.0 138 3 M methionine 3.9 90 2 N asparagine 4.1 93 3 P proline 13.0 296 6 Q glutamine 9.6 219 8 R arginine 3.8 87 3 S serine 10.9 248 6 T threonine 4.5 103 3 V valine 2.9 67 2 W tryptophan 0.6 13 3 Y tyrosine 3.4 78 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 AT rich interactive domain 1A isoform a ARID1A 0.601 AT rich interactive domain 1A isoform b ARID1B 0.421 AT rich interactive domain 1B (SWI1-like) isoform 3 ... ARID1B 0.420 AT rich interactive domain 1B (SWI1-like) isoform 2 ... ARID1B 0.416 AT rich interactive domain 1B (SWI1-like) isoform 1 ... COL3A1 0.021 collagen type III alpha 1 preproprotein FLJ22184 0.020 PREDICTED: hypothetical protein FLJ22184 FLJ22184 0.020 PREDICTED: hypothetical protein LOC80164 COL1A1 0.019 alpha 1 type I collagen preproprotein COL5A1 0.019 alpha 1 type V collagen preproprotein HRNR 0.018 hornerin MED15 0.018 mediator complex subunit 15 isoform b COL2A1 0.017 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.017 collagen, type II, alpha 1 isoform 2 precursor [Hom... MED15 0.017 mediator complex subunit 15 isoform a PRR12 0.017 proline rich 12 COL16A1 0.017 alpha 1 type XVI collagen precursor MN1 0.017 meningioma 1 COL4A5 0.017 type IV collagen alpha 5 isoform 3 precursor PCLO 0.016 piccolo isoform 2 PCLO 0.016 piccolo isoform 1 ARID3A 0.016 AT rich interactive domain 3A (BRIGHT- like) protein ... COL11A1 0.016 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.016 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.016 alpha 1 type XI collagen isoform A preproprotein [Ho... COL4A5 0.016 type IV collagen alpha 5 isoform 2 precursor NCOA6 0.016 nuclear receptor coactivator 6 NACA 0.016 nascent polypeptide-associated complex alpha subuni... COL1A2 0.016 alpha 2 type I collagen ATN1 0.016 atrophin-1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.