TAPBP 24318

Name: TAPBP	Sequence: fasta or formatted (412aa)		NCBI GI: 27436897
Description: tapasin isoform 3 precursor		Referenced in: HLA and Related Proteins
Other entries for this name: alt prot [448aa] tapasin isoform 1 precursor alt prot [299aa] tapasin isoform 2 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 12.1 50 2 C cysteine 1.5 6 1 D aspartate 2.7 11 3 E glutamate 5.6 23 1 F phenylalanine 2.2 9 1 G glycine 9.2 38 2 H histidine 3.2 13 2 I isoleucine 1.5 6 1 K lysine 2.2 9 1 L leucine 13.6 56 3 M methionine 1.7 7 1 N asparagine 0.7 3 1 P proline 11.9 49 3 Q glutamine 4.4 18 2 R arginine 5.1 21 2 S serine 7.5 31 2 T threonine 4.6 19 2 V valine 5.8 24 2 W tryptophan 2.7 11 1 Y tyrosine 1.9 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tapasin isoform 3 precursor TAPBP 0.979 tapasin isoform 1 precursor TAPBP 0.691 tapasin isoform 2 precursor TAPBPL 0.059 TAP binding protein-like MTF1 0.019 metal-regulatory transcription factor 1 PEX6 0.017 peroxisomal biogenesis factor 6 KCNH3 0.017 potassium voltage-gated channel, subfamily H (eag-re... HLA-DRB1 0.016 major histocompatibility complex, class II, DR beta... LOC100290481 0.016 PREDICTED: hypothetical protein XP_002348153 LOC100290966 0.015 PREDICTED: hypothetical protein XP_002346811 LOC100294276 0.015 PREDICTED: similar to major histocompatibility comp... LOC100294276 0.015 PREDICTED: similar to major histocompatibility comp... LOC100287256 0.013 PREDICTED: hypothetical protein LOC100287256 0.013 PREDICTED: hypothetical protein XP_002342497 HLA-DPB1 0.012 major histocompatibility complex, class II, DP beta ... LOC100293496 0.012 PREDICTED: hypothetical protein HLA-DRB3 0.012 major histocompatibility complex, class II, DR beta ... LOC100133811 0.012 PREDICTED: similar to HLA class II histocompatibili... LOC100294275 0.012 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.012 PREDICTED: similar to major histocompatibility comp... FGFBP2 0.012 killer-specific secretory protein of 37 kDa precurso... RERE 0.012 atrophin-1 like protein isoform b RERE 0.012 atrophin-1 like protein isoform a RERE 0.012 atrophin-1 like protein isoform a LOC100294036 0.011 PREDICTED: similar to HLA class II histocompatibili... LOC100294468 0.011 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.011 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.011 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.011 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.011 PREDICTED: similar to HLA class II histocompatibili... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.