Guide to the Human Genome
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Name: PDP1 Sequence: fasta or formatted (562aa) NCBI GI: 239985422
Description:

pyruvate dehyrogenase phosphatase catalytic subunit 1 isoform 2

Referenced in:

Serine / Threonine Protein Phosphatases
TCA Cycle

Other entries for this name:
alt prot [596aa] pyruvate dehyrogenase phosphatase catalytic subunit 1 isoform 1
alt mRNA [562aa] pyruvate dehyrogenase phosphatase catalytic subunit 1 isoform 2
alt prot [537aa] pyruvate dehyrogenase phosphatase catalytic subunit 1 isoform 3 p...
alt prot [537aa] pyruvate dehyrogenase phosphatase catalytic subunit 1 isoform 3 p...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         39           2
 C cysteine            2.1         12           2
 D aspartate           5.2         29           2
 E glutamate           6.2         35           2
 F phenylalanine       4.1         23           2
 G glycine             5.5         31           2
 H histidine           3.9         22           2
 I isoleucine          4.3         24           2
 K lysine              4.1         23           1
 L leucine            10.3         58           2
 M methionine          2.0         11           1
 N asparagine          4.8         27           2
 P proline             5.7         32           2
 Q glutamine           4.6         26           2
 R arginine            6.0         34           2
 S serine              7.1         40           3
 T threonine           5.2         29           1
 V valine              6.6         37           2
 W tryptophan          1.2          7           2
 Y tyrosine            4.1         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pyruvate dehyrogenase phosphatase catalytic subunit... 
PDP1                  1.000   pyruvate dehyrogenase phosphatase catalytic subunit...
PDP1                  1.000   pyruvate dehyrogenase phosphatase catalytic subunit...
PDP1                  0.954   pyruvate dehyrogenase phosphatase catalytic subunit ...
PDP1                  0.954   pyruvate dehyrogenase phosphatase catalytic subunit...
PDP2                  0.425   pyruvate dehydrogenase phosphatase isoenzyme 2 [Homo...
ILKAP                 0.034   integrin-linked kinase-associated protein phosphatas...
PPM1D                 0.031   protein phosphatase 1D 
PPM1G                 0.031   protein phosphatase 1G 
PPM1G                 0.031   protein phosphatase 1G 
PPM1L                 0.027   protein phosphatase 1 (formerly 2C)-like 
FLJ40125              0.027   protein phosphatase 1B-like 
PPM1B                 0.022   protein phosphatase 1B isoform 5 
PPM1B                 0.022   protein phosphatase 1B isoform 4 
PPM1B                 0.022   protein phosphatase 1B isoform 2 
PPM1B                 0.022   protein phosphatase 1B isoform 1 
PPM1H                 0.022   protein phosphatase 1H (PP2C domain containing) [Ho...
PPM1K                 0.018   protein phosphatase 1K (PP2C domain containing) [Ho...
PPM1F                 0.018   protein phosphatase 1F 
PPM1M                 0.017   protein phosphatase 1M isoform a 
PPM1A                 0.017   protein phosphatase 1A isoform 1 
PPM1A                 0.017   protein phosphatase 1A isoform 2 
PPM1A                 0.017   protein phosphatase 1A isoform 3 
PPM1M                 0.017   protein phosphatase 1M isoform b 
MAP3K7IP1             0.013   mitogen-activated protein kinase kinase kinase 7 inte...
MAP3K7IP1             0.013   mitogen-activated protein kinase kinase kinase 7 int...
PPM1E                 0.013   protein phosphatase 1E 
PHLPP2                0.010   PH domain and leucine rich repeat protein phosphatas...
PHLPP1                0.008   PH domain and leucine rich repeat protein phosphatas...
PPM1J                 0.007   protein phosphatase 1J (PP2C domain containing) [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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