Guide to the Human Genome
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Name: DSG3 Sequence: fasta or formatted (999aa) NCBI GI: 119964718
Description:

desmoglein 3 preproprotein

Referenced in:

Cadherins and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         71           2
 C cysteine            2.4         24           2
 D aspartate           5.8         58           2
 E glutamate           6.1         61           3
 F phenylalanine       3.5         35           2
 G glycine             8.8         88           2
 H histidine           1.1         11           1
 I isoleucine          6.1         61           1
 K lysine              4.4         44           2
 L leucine             7.8         78           6
 M methionine          1.8         18           2
 N asparagine          4.8         48           2
 P proline             4.9         49           2
 Q glutamine           4.2         42           2
 R arginine            4.0         40           2
 S serine              8.5         85           3
 T threonine           8.2         82           2
 V valine              7.2         72           3
 W tryptophan          0.5          5           1
 Y tyrosine            2.7         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   desmoglein 3 preproprotein 
DSG4                  0.471   desmoglein 4 isoform 2 
DSG4                  0.455   desmoglein 4 isoform 1 
DSG1                  0.352   desmoglein 1 preproprotein 
DSG2                  0.305   desmoglein 2 preproprotein 
DSC2                  0.156   desmocollin 2 isoform Dsc2a preproprotein 
DSC3                  0.148   desmocollin 3 isoform Dsc3a preproprotein 
DSC1                  0.146   desmocollin 1 isoform Dsc1a preproprotein 
CDH2                  0.139   cadherin 2, type 1 preproprotein 
DSC2                  0.137   desmocollin 2 isoform Dsc2b preproprotein 
CDH4                  0.135   cadherin 4, type 1 preproprotein 
CDH1                  0.133   cadherin 1, type 1 preproprotein 
DSC3                  0.132   desmocollin 3 isoform Dsc3b preproprotein 
DSC1                  0.130   desmocollin 1 isoform Dsc1b preproprotein 
CDH15                 0.127   cadherin 15 preproprotein 
CDH3                  0.120   cadherin 3, type 1 preproprotein 
CDH13                 0.108   cadherin 13 preproprotein 
CDH26                 0.104   cadherin-like 26 isoform a 
CDH7                  0.082   cadherin 7, type 2 preproprotein 
CDH7                  0.082   cadherin 7, type 2 preproprotein 
CDH18                 0.079   cadherin 18, type 2 preproprotein 
CDH11                 0.077   cadherin 11, type 2 preproprotein 
CDH6                  0.076   cadherin 6, type 2 preproprotein 
CDH12                 0.075   cadherin 12, type 2 preproprotein 
CDH20                 0.073   cadherin 20, type 2 preproprotein 
CDH10                 0.072   cadherin 10, type 2 preproprotein 
CDH9                  0.071   cadherin 9, type 2 preproprotein 
CDH22                 0.071   cadherin 22 precursor 
CDH5                  0.070   cadherin 5, type 2 preproprotein 
CDH17                 0.068   cadherin 17 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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