Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CDH17 Sequence: fasta or formatted (832aa) NCBI GI: 221316595
Description:

cadherin 17 precursor

Referenced in:

Cadherins and Related Proteins

Other entries for this name:
alt mRNA [832aa] cadherin 17 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         45           2
 C cysteine            0.8          7           1
 D aspartate           6.5         54           3
 E glutamate           6.4         53           2
 F phenylalanine       4.7         39           2
 G glycine             6.7         56           2
 H histidine           2.0         17           1
 I isoleucine          7.5         62           2
 K lysine              5.4         45           2
 L leucine             8.4         70           2
 M methionine          1.3         11           1
 N asparagine          5.4         45           2
 P proline             6.4         53           2
 Q glutamine           4.3         36           1
 R arginine            3.5         29           1
 S serine              6.9         57           2
 T threonine           6.9         57           2
 V valine              7.7         64           2
 W tryptophan          0.5          4           1
 Y tyrosine            3.4         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cadherin 17 precursor 
CDH17                 1.000   cadherin 17 precursor 
CDH16                 0.198   cadherin 16 precursor 
CDH4                  0.142   cadherin 4, type 1 preproprotein 
CDH2                  0.140   cadherin 2, type 1 preproprotein 
DSC3                  0.134   desmocollin 3 isoform Dsc3b preproprotein 
DSC3                  0.134   desmocollin 3 isoform Dsc3a preproprotein 
DSC2                  0.133   desmocollin 2 isoform Dsc2b preproprotein 
DSC2                  0.133   desmocollin 2 isoform Dsc2a preproprotein 
CDH13                 0.130   cadherin 13 preproprotein 
CDH18                 0.117   cadherin 18, type 2 preproprotein 
CDH1                  0.114   cadherin 1, type 1 preproprotein 
FAT1                  0.112   FAT tumor suppressor 1 precursor 
CDH10                 0.111   cadherin 10, type 2 preproprotein 
CDH15                 0.110   cadherin 15 preproprotein 
CDH26                 0.110   cadherin-like 26 isoform a 
CDH11                 0.109   cadherin 11, type 2 preproprotein 
DSC1                  0.108   desmocollin 1 isoform Dsc1b preproprotein 
DSC1                  0.108   desmocollin 1 isoform Dsc1a preproprotein 
CDH20                 0.108   cadherin 20, type 2 preproprotein 
CDH8                  0.108   cadherin 8, type 2 preproprotein 
FAT3                  0.104   FAT tumor suppressor homolog 3 
CDH12                 0.104   cadherin 12, type 2 preproprotein 
CDH24                 0.104   cadherin-like 24 isoform 2 
CDH6                  0.102   cadherin 6, type 2 preproprotein 
CELSR3                0.102   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
FAT4                  0.100   FAT tumor suppressor homolog 4 
CDH3                  0.100   cadherin 3, type 1 preproprotein 
CDH7                  0.098   cadherin 7, type 2 preproprotein 
CDH7                  0.098   cadherin 7, type 2 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press