Guide to the Human Genome
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Name: SYNE2 Sequence: fasta or formatted (6885aa) NCBI GI: 118918403
Description:

spectrin repeat containing, nuclear envelope 2 isoform 1

Referenced in:

Spectrin and Plectin Families

Other entries for this name:
alt prot [6907aa] spectrin repeat containing, nuclear envelope 2 isoform 5
alt prot [429aa] spectrin repeat containing, nuclear envelope 2 isoform 2
alt prot [556aa] spectrin repeat containing, nuclear envelope 2 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2        355           3
 C cysteine            1.5        103           2
 D aspartate           5.1        354           2
 E glutamate          11.6        801           4
 F phenylalanine       2.6        178           2
 G glycine             2.8        191           2
 H histidine           2.5        169           3
 I isoleucine          5.2        357           3
 K lysine              8.7        596           3
 L leucine            13.0        893           9
 M methionine          2.4        163           2
 N asparagine          4.6        318           2
 P proline             2.8        193           3
 Q glutamine           7.7        531           5
 R arginine            4.2        288           3
 S serine              7.5        517           4
 T threonine           4.8        331           3
 V valine              4.8        329           2
 W tryptophan          1.4         95           1
 Y tyrosine            1.8        123           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spectrin repeat containing, nuclear envelope 2 isof... 
SYNE2                 0.999   spectrin repeat containing, nuclear envelope 2 isof...
SYNE1                 0.164   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.164   spectrin repeat containing, nuclear envelope 1 isof...
SYNE1                 0.143   spectrin repeat containing, nuclear envelope 1 isof...
SYNE2                 0.074   spectrin repeat containing, nuclear envelope 2 isofo...
SYNE1                 0.067   spectrin repeat containing, nuclear envelope 1 isof...
SYNE2                 0.058   spectrin repeat containing, nuclear envelope 2 isofo...
DST                   0.015   dystonin isoform 4 
DST                   0.015   dystonin isoform 3 
DST                   0.015   dystonin isoform 2 
DST                   0.015   dystonin isoform 1 
DST                   0.015   dystonin isoform 1eA precursor 
CLMN                  0.015   calmin 
UTRN                  0.015   utrophin 
MACF1                 0.014   microfilament and actin filament cross-linker protei...
PLEC1                 0.013   plectin 1 isoform 3 
PLEC1                 0.013   plectin 1 isoform 8 
PLEC1                 0.013   plectin 1 isoform 2 
PLEC1                 0.013   plectin 1 isoform 1 
MACF1                 0.013   microfilament and actin filament cross-linker protei...
PLEC1                 0.013   plectin 1 isoform 11 
PLEC1                 0.013   plectin 1 isoform 10 
PLEC1                 0.013   plectin 1 isoform 7 
PLEC1                 0.013   plectin 1 isoform 6 
LOC652460             0.013   PREDICTED: similar to plectin 1, partial 
SPTBN1                0.013   spectrin, beta, non-erythrocytic 1 isoform 2 
SPTBN1                0.013   spectrin, beta, non-erythrocytic 1 isoform 1 
SPTBN2                0.013   spectrin, beta, non-erythrocytic 2 
SPTB                  0.013   spectrin beta isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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