SYNE1 5534

Name: SYNE1	Sequence: fasta or formatted (8797aa)		NCBI GI: 154277116
Description: spectrin repeat containing, nuclear envelope 1 isoform 1		Referenced in: Protein Composition and Structure Gene Structure Spectrin and Plectin Families
Other entries for this name: alt prot [3321aa] spectrin repeat containing, nuclear envelope 1 isoform 4 alt prot [982aa] spectrin repeat containing, nuclear envelope 1 isoform 3 alt prot [8749aa] spectrin repeat containing, nuclear envelope 1 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.5 570 3 C cysteine 1.3 117 2 D aspartate 5.3 465 2 E glutamate 11.0 971 4 F phenylalanine 2.3 206 2 G glycine 3.3 291 2 H histidine 2.7 238 2 I isoleucine 4.4 391 3 K lysine 7.9 697 3 L leucine 13.0 1148 6 M methionine 2.3 204 2 N asparagine 3.3 289 2 P proline 2.0 176 3 Q glutamine 8.7 763 3 R arginine 4.8 425 2 S serine 8.3 730 3 T threonine 4.7 413 2 V valine 4.9 430 2 W tryptophan 1.5 131 1 Y tyrosine 1.6 142 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 spectrin repeat containing, nuclear envelope 1 isof... SYNE1 0.981 spectrin repeat containing, nuclear envelope 1 isofo... SYNE1 0.377 spectrin repeat containing, nuclear envelope 1 isof... SYNE2 0.118 spectrin repeat containing, nuclear envelope 2 isof... SYNE2 0.118 spectrin repeat containing, nuclear envelope 2 isof... SYNE1 0.109 spectrin repeat containing, nuclear envelope 1 isof... DST 0.020 dystonin isoform 4 DST 0.020 dystonin isoform 3 DST 0.020 dystonin isoform 2 DST 0.020 dystonin isoform 1 DST 0.020 dystonin isoform 1eA precursor MACF1 0.019 microfilament and actin filament cross-linker protei... MACF1 0.018 microfilament and actin filament cross-linker protei... SYNE2 0.018 spectrin repeat containing, nuclear envelope 2 isofo... DMD 0.017 dystrophin Dp427c isoform DMD 0.017 dystrophin Dp427p1 isoform DMD 0.017 dystrophin Dp427m isoform SYNE2 0.017 spectrin repeat containing, nuclear envelope 2 isofo... UTRN 0.016 utrophin C14orf49 0.015 nesprin-3 PLEC1 0.014 plectin 1 isoform 3 PLEC1 0.014 plectin 1 isoform 1 PLEC1 0.014 plectin 1 isoform 2 PLEC1 0.014 plectin 1 isoform 8 PLEC1 0.014 plectin 1 isoform 7 PLEC1 0.014 plectin 1 isoform 11 PLEC1 0.014 plectin 1 isoform 10 PLEC1 0.014 plectin 1 isoform 6 CLMN 0.014 calmin SPTBN1 0.013 spectrin, beta, non-erythrocytic 1 isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.