Guide to the Human Genome
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Search of human proteins with 239748820

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
sapiens]
         (266 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ...   548   e-156
gi|239740857 PREDICTED: similar to major histocompatibility comp...   525   e-149
gi|239740859 PREDICTED: similar to major histocompatibility comp...   509   e-145
gi|155030211 major histocompatibility complex, class II, DR beta...   505   e-143
gi|239748785 PREDICTED: similar to HLA class II histocompatibili...   498   e-141
gi|239740853 PREDICTED: similar to major histocompatibility comp...   498   e-141
gi|239740745 PREDICTED: similar to HLA class II histocompatibili...   493   e-140
gi|239740695 PREDICTED: similar to HLA class II histocompatibili...   493   e-140
gi|17986005 major histocompatibility complex, class II, DR beta ...   491   e-139
gi|18641375 major histocompatibility complex, class II, DR beta ...   487   e-138
gi|239740855 PREDICTED: similar to major histocompatibility comp...   482   e-136
gi|52630344 major histocompatibility complex, class II, DR beta ...   477   e-135
gi|239740743 PREDICTED: similar to HLA class II histocompatibili...   431   e-121
gi|239740693 PREDICTED: similar to HLA class II histocompatibili...   431   e-121
gi|239758092 PREDICTED: similar to HLA class II histocompatibili...   423   e-119
gi|239758090 PREDICTED: major histocompatibility complex, class ...   417   e-117
gi|169217452 PREDICTED: similar to HLA class II histocompatibili...   347   8e-96
gi|239758095 PREDICTED: similar to major histocompatibility comp...   345   2e-95
gi|239740749 PREDICTED: similar to major histocompatibility comp...   345   2e-95
gi|239748788 PREDICTED: similar to major histocompatibility comp...   343   9e-95
gi|239740863 PREDICTED: similar to major histocompatibility comp...   342   2e-94
gi|239513955 PREDICTED: similar to major histocompatibility comp...   342   2e-94
gi|169168591 PREDICTED: similar to major histocompatibility comp...   335   2e-92
gi|150418002 major histocompatibility complex, class II, DQ beta...   334   5e-92
gi|239740918 PREDICTED: similar to major histocompatibility comp...   333   7e-92
gi|239740920 PREDICTED: similar to major histocompatibility comp...   332   2e-91
gi|24797076 major histocompatibility complex, class II, DP beta ...   318   4e-87
gi|4504403 major histocompatibility complex, class II, DO beta p...   288   3e-78
gi|169168671 PREDICTED: similar to MHC class II antigen [Homo sa...   255   2e-68
gi|169168589 PREDICTED: similar to MHC class II antigen [Homo sa...   206   2e-53

>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
           sapiens]
          Length = 266

 Score =  548 bits (1412), Expect = e-156
 Identities = 266/266 (100%), Positives = 266/266 (100%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
           MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF
Sbjct: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
           HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV
Sbjct: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG
Sbjct: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLGAGLFIYFRNQKGHSGLQPRGFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266


>gi|239740857 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  525 bits (1351), Expect = e-149
 Identities = 255/266 (95%), Positives = 257/266 (96%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
           MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLE    ECHFFNGTERVR L+RYF
Sbjct: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
           HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQ+R  VD YCRHNYGV ESFTV
Sbjct: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV 120

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG
Sbjct: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLGAGLFIYFRNQKGHSGLQPRGFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266


>gi|239740859 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  509 bits (1311), Expect = e-145
 Identities = 251/267 (94%), Positives = 254/267 (95%), Gaps = 1/267 (0%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKF-ECHFFNGTERVRLLERY 59
           MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTR +    V   ECHFFNGTERVR L+RY
Sbjct: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60

Query: 60  FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFT 119
           FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQ+R  VD YCRHNYGV ESFT
Sbjct: 61  FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120

Query: 120 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 179
           VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN
Sbjct: 121 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 180

Query: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 239
           GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL
Sbjct: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 240

Query: 240 LFLGAGLFIYFRNQKGHSGLQPRGFLS 266
           LFLGAGLFIYFRNQKGHSGLQPRGFLS
Sbjct: 241 LFLGAGLFIYFRNQKGHSGLQPRGFLS 267


>gi|155030211 major histocompatibility complex, class II, DR beta 1
           precursor [Homo sapiens]
          Length = 266

 Score =  505 bits (1300), Expect = e-143
 Identities = 245/266 (92%), Positives = 253/266 (95%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
           MVCL+LPGGSCM  LTVTLMVLSSPLAL+GDTRPRFL + K ECHFFNGTERVR L+RYF
Sbjct: 1   MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
           +NQEE+VRFDSDVGEFRAVTELGRPDAEYWNSQKD+LEQ RAAVDTYCRHNYGV ESFTV
Sbjct: 61  YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV 120

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRV PKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWF NGQEEK G+VSTGLI NG
Sbjct: 121 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG 180

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-9 beta chain [Homo sapiens]
          Length = 266

 Score =  498 bits (1281), Expect = e-141
 Identities = 242/266 (90%), Positives = 251/266 (94%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
           MVCL+LPGGSCMA LTVTLMVLSSPLALAGDT+PRFL++ KFECHFFNGTERVR L R  
Sbjct: 1   MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLKQDKFECHFFNGTERVRYLHRGI 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
           +NQEENVRFDSDVGE+RAVTELGRP AE WNSQKD LE+RRA VDT CRHNYGVGESFTV
Sbjct: 61  YNQEENVRFDSDVGEYRAVTELGRPVAESWNSQKDFLERRRAEVDTVCRHNYGVGESFTV 120

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI NG
Sbjct: 121 QRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239740853 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  498 bits (1281), Expect = e-141
 Identities = 241/266 (90%), Positives = 249/266 (93%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
           MVCL+LPGGS +A LTVTLMVLSS LA AGDTRPRFLE +K ECHFFNGTERVR LER+F
Sbjct: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELLKSECHFFNGTERVRFLERHF 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
           HNQEE  RFDSDVGE+RAV ELGRPDAEYWNSQKDLLEQ+R  VD YCRHNYGVGESFTV
Sbjct: 61  HNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTV 120

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI NG
Sbjct: 121 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW ARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLL 240

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  493 bits (1268), Expect = e-140
 Identities = 239/266 (89%), Positives = 250/266 (93%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
           MVCL+LPGGSCMA LTVTLMVLSSPLALAGDT+PRFL + K++CHFFNGTERV+ LER F
Sbjct: 1   MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLF 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
           +NQEE VRFDSDVGE+RAVTELGRP AE WNSQKD+LE RR  VDT CRHNYGVGESFTV
Sbjct: 61  YNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTV 120

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI NG
Sbjct: 121 QRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  493 bits (1268), Expect = e-140
 Identities = 239/266 (89%), Positives = 250/266 (93%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
           MVCL+LPGGSCMA LTVTLMVLSSPLALAGDT+PRFL + K++CHFFNGTERV+ LER F
Sbjct: 1   MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLF 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
           +NQEE VRFDSDVGE+RAVTELGRP AE WNSQKD+LE RR  VDT CRHNYGVGESFTV
Sbjct: 61  YNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTV 120

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI NG
Sbjct: 121 QRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|17986005 major histocompatibility complex, class II, DR beta 3
           precursor [Homo sapiens]
          Length = 266

 Score =  491 bits (1264), Expect = e-139
 Identities = 240/266 (90%), Positives = 248/266 (93%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
           MVCL+LPGGS +A LTVTLMVLSS LA AGDTRPRFLE  K ECHFFNGTERVR L+RYF
Sbjct: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELRKSECHFFNGTERVRYLDRYF 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
           HNQEE +RFDSDVGE+RAVTELGRP AE WNSQKDLLEQ+R  VD YCRHNYGVGESFTV
Sbjct: 61  HNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFTV 120

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI NG
Sbjct: 121 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPSVTS LTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWRARSESAQSKMLSGVGGFVLGLL 240

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|18641375 major histocompatibility complex, class II, DR beta 5
           precursor [Homo sapiens]
          Length = 266

 Score =  487 bits (1254), Expect = e-138
 Identities = 235/266 (88%), Positives = 249/266 (93%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
           MVCL+LPGGS MA LTVTLMVLSSPLALAGDTRPRFL++ K+ECHFFNGTERVR L R  
Sbjct: 1   MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
           +NQEE++RFDSDVGE+RAVTELGRPDAEYWNSQKD LE RRAAVDTYCRHNYGVGESFTV
Sbjct: 61  YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV 120

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRV PKVTVYP++TQ LQHHNLLVCSV+GFYPGSIEVRWFRN QEEK GVVSTGLI NG
Sbjct: 121 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG 180

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA+SESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL 240

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLGAGLFIYF+NQKGHSGL P G +S
Sbjct: 241 FLGAGLFIYFKNQKGHSGLHPTGLVS 266


>gi|239740855 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  482 bits (1241), Expect = e-136
 Identities = 237/267 (88%), Positives = 246/267 (92%), Gaps = 1/267 (0%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRF-LEEVKFECHFFNGTERVRLLERY 59
           MVCL+LPGGS +A LTVTLMVLSS LA AGDTR +  L  +K ECHFFNGTERVR LER+
Sbjct: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60

Query: 60  FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFT 119
           FHNQEE  RFDSDVGE+RAV ELGRPDAEYWNSQKDLLEQ+R  VD YCRHNYGVGESFT
Sbjct: 61  FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120

Query: 120 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 179
           VQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI N
Sbjct: 121 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 180

Query: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 239
           GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW ARSESAQSKMLSGVGGFVLGL
Sbjct: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 240

Query: 240 LFLGAGLFIYFRNQKGHSGLQPRGFLS 266
           LFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 LFLGAGLFIYFRNQKGHSGLQPTGFLS 267


>gi|52630344 major histocompatibility complex, class II, DR beta 4
           precursor [Homo sapiens]
          Length = 266

 Score =  477 bits (1227), Expect = e-135
 Identities = 231/266 (86%), Positives = 245/266 (92%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
           MVCL+LPGGSCMA LTVTL VLSSPLALAGDT+PRFLE+ K ECHF NGTERV  L RY 
Sbjct: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
           +NQEE  R++SD+GE++AVTELGRPDAEYWNSQKDLLE+RRA VDTYCR+NYGV ESFTV
Sbjct: 61  YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRV PKVTVYPSKTQPLQHHNLLVCSV+GFYPGSIEVRWFRNGQEEK GVVSTGLI NG
Sbjct: 121 QRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPS+ SPLTV+W ARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLSGVGGFVLGLL 240

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLG GLFIYFRNQKGHSGLQP G LS
Sbjct: 241 FLGTGLFIYFRNQKGHSGLQPTGLLS 266


>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  431 bits (1108), Expect = e-121
 Identities = 208/232 (89%), Positives = 217/232 (93%)

Query: 35  RFLEEVKFECHFFNGTERVRLLERYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQK 94
           RFL + K++CHFFNGTERV+ LER F+NQEE VRFDSDVGE+RAVTELGRP AE WNSQK
Sbjct: 33  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92

Query: 95  DLLEQRRAAVDTYCRHNYGVGESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154
           D+LE RR  VDT CRHNYGVGESFTVQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPG
Sbjct: 93  DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 152

Query: 155 SIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214
           SIEVRWFRNGQEEK GVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLT
Sbjct: 153 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 212

Query: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS 266
           VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 213 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264


>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  431 bits (1108), Expect = e-121
 Identities = 208/232 (89%), Positives = 217/232 (93%)

Query: 35  RFLEEVKFECHFFNGTERVRLLERYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQK 94
           RFL + K++CHFFNGTERV+ LER F+NQEE VRFDSDVGE+RAVTELGRP AE WNSQK
Sbjct: 33  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92

Query: 95  DLLEQRRAAVDTYCRHNYGVGESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154
           D+LE RR  VDT CRHNYGVGESFTVQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPG
Sbjct: 93  DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 152

Query: 155 SIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214
           SIEVRWFRNGQEEK GVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLT
Sbjct: 153 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 212

Query: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS 266
           VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 213 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264


>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain [Homo sapiens]
          Length = 253

 Score =  423 bits (1087), Expect = e-119
 Identities = 217/268 (80%), Positives = 230/268 (85%), Gaps = 17/268 (6%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
           MVCL+LPGGSCMA LTVTLMVLSSPLALAGDT+PRFL + K++CHFFNGTERV+ LER F
Sbjct: 1   MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLF 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
           +NQEE VRFDSDVGE+RAVTELGRP AE    Q DLL          C     + +SF +
Sbjct: 61  YNQEEFVRFDSDVGEYRAVTELGRPVAEQKTKQGDLL----------C-----LPDSFPL 105

Query: 121 Q--RRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIH 178
                VHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI 
Sbjct: 106 PCFLLVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQ 165

Query: 179 NGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLG 238
           NGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEWRARSESAQSKMLSGVGGFVLG
Sbjct: 166 NGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLG 225

Query: 239 LLFLGAGLFIYFRNQKGHSGLQPRGFLS 266
           LLFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 226 LLFLGAGLFIYFRNQKGHSGLQPTGFLS 253


>gi|239758090 PREDICTED: major histocompatibility complex, class II,
           DR beta 4 [Homo sapiens]
          Length = 278

 Score =  417 bits (1073), Expect = e-117
 Identities = 201/232 (86%), Positives = 213/232 (91%)

Query: 35  RFLEEVKFECHFFNGTERVRLLERYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQK 94
           RFLE+ K ECHF NGTERV  L RY +NQEE  R++SD+GE++AVTELGRPDAEYWNSQK
Sbjct: 47  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 106

Query: 95  DLLEQRRAAVDTYCRHNYGVGESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154
           DLLE+RRA VDTYCR+NYGV ESFTVQRRV PKVTVYPSKTQPLQHHNLLVCSV+GFYPG
Sbjct: 107 DLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPG 166

Query: 155 SIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214
           SIEVRWFRNGQEEK GVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ SPLT
Sbjct: 167 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLT 226

Query: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS 266
           V+W ARSESAQSKMLSGVGGFVLGLLFLG GLFIYFRNQKGHSGLQP G LS
Sbjct: 227 VQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278


>gi|169217452 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-4 beta chain, partial [Homo sapiens]
          Length = 223

 Score =  347 bits (889), Expect = 8e-96
 Identities = 162/177 (91%), Positives = 173/177 (97%)

Query: 35  RFLEEVKFECHFFNGTERVRLLERYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQK 94
           RFLE+VK ECHFFNGTERVR L+RYF++QEE VRFDSDVGE+RAVTELGRPDAEYWNSQK
Sbjct: 47  RFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQK 106

Query: 95  DLLEQRRAAVDTYCRHNYGVGESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154
           DLLEQ+RAAVDTYCRHNYGVGESFTVQRRV+P+VTVYP+KTQPLQHHNLLVCSV+GFYPG
Sbjct: 107 DLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPG 166

Query: 155 SIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS 211
           SIEVRWFRNGQEEKTGVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPS+TS
Sbjct: 167 SIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223


>gi|239758095 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  345 bits (885), Expect = 2e-95
 Identities = 170/260 (65%), Positives = 202/260 (77%)

Query: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63
           LR+PGG   A +T+ L +LS+P+A   D+   F+ + K  C+F NGTERVRL+ R  +N+
Sbjct: 7   LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66

Query: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123
           EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE++RAAVD  CRHNY +    T+QRR
Sbjct: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126

Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
           V P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRNGQEE  GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLIRNGDWT 186

Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 244 AGLFIYFRNQKGHSGLQPRG 263
            GL I+ R+QKG      RG
Sbjct: 247 LGLIIHHRSQKGEEPQGKRG 266


>gi|239740749 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  345 bits (885), Expect = 2e-95
 Identities = 170/260 (65%), Positives = 202/260 (77%)

Query: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63
           LR+PGG   A +T+ L +LS+P+A   D+   F+ + K  C+F NGTERVRL+ R  +N+
Sbjct: 7   LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66

Query: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123
           EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE++RAAVD  CRHNY +    T+QRR
Sbjct: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126

Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
           V P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRNGQEE  GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLIRNGDWT 186

Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 244 AGLFIYFRNQKGHSGLQPRG 263
            GL I+ R+QKG      RG
Sbjct: 247 LGLIIHHRSQKGEEPQGKRG 266


>gi|239748788 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 2 [Homo sapiens]
          Length = 281

 Score =  343 bits (880), Expect = 9e-95
 Identities = 169/260 (65%), Positives = 202/260 (77%)

Query: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63
           LR+PGG  +A +T+ L +LS+P+A   D+   F+ + K  C+F NGTERVRL+ R  +N+
Sbjct: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66

Query: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123
           EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE++RAAVD  CRHNY +    T+QRR
Sbjct: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126

Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
           V P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE  GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186

Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 244 AGLFIYFRNQKGHSGLQPRG 263
            GL I+ R+QKG      RG
Sbjct: 247 LGLIIHHRSQKGEEPQGKRG 266


>gi|239740863 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  342 bits (878), Expect = 2e-94
 Identities = 169/260 (65%), Positives = 201/260 (77%)

Query: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63
           LR+PGG   A +T+ L +LS+P+A   D+   F+ + K  C+F NGTERVRL+ R  +N+
Sbjct: 7   LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66

Query: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123
           EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE++RAAVD  CRHNY +    T+QRR
Sbjct: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126

Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
           V P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE  GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186

Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 244 AGLFIYFRNQKGHSGLQPRG 263
            GL I+ R+QKG      RG
Sbjct: 247 LGLIIHHRSQKGEEPQGKRG 266


>gi|239513955 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  342 bits (878), Expect = 2e-94
 Identities = 169/260 (65%), Positives = 201/260 (77%)

Query: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63
           LR+PGG   A +T+ L +LS+P+A   D+   F+ + K  C+F NGTERVRL+ R  +N+
Sbjct: 7   LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66

Query: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123
           EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE++RAAVD  CRHNY +    T+QRR
Sbjct: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126

Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
           V P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE  GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186

Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 244 AGLFIYFRNQKGHSGLQPRG 263
            GL I+ R+QKG      RG
Sbjct: 247 LGLIIHHRSQKGEEPQGKRG 266


>gi|169168591 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 1 [Homo sapiens]
          Length = 261

 Score =  335 bits (859), Expect = 2e-92
 Identities = 163/252 (64%), Positives = 198/252 (78%)

Query: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63
           LR+PGG  +A +T+ L +LS+P+A   D+   F+ + K  C+F NGTERVR + RY +N+
Sbjct: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVFQFKGMCYFTNGTERVRGVTRYIYNR 66

Query: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123
           EE  RFDSDVG +RAVT LG P AEYWNSQK++LE+ RA+VDT CRHNY +    T+QRR
Sbjct: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRASVDTVCRHNYQLELRTTLQRR 126

Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
           V P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE  GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186

Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 244 AGLFIYFRNQKG 255
            GL I+ R+QKG
Sbjct: 247 LGLIIHHRSQKG 258


>gi|150418002 major histocompatibility complex, class II, DQ beta 1
           precursor [Homo sapiens]
          Length = 261

 Score =  334 bits (856), Expect = 5e-92
 Identities = 166/252 (65%), Positives = 195/252 (77%)

Query: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63
           LR+PG   +A +T+ L +LSS LA   D+   F+ + K  C+F NGTERVRL+ RY +N+
Sbjct: 7   LRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNR 66

Query: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123
           EE  RFDSDVG +RAVT  GRPDAEYWNSQK++LE  RA +DT CRHNY V     +QRR
Sbjct: 67  EEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRR 126

Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
           V P VT+ PS+T+ L HHNLLVCSV+ FYPG I+VRWFRN QEE  GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186

Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSGVGGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLG 246

Query: 244 AGLFIYFRNQKG 255
            GL I  R+QKG
Sbjct: 247 LGLIIRQRSQKG 258


>gi|239740918 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 1 [Homo sapiens]
          Length = 281

 Score =  333 bits (855), Expect = 7e-92
 Identities = 163/260 (62%), Positives = 199/260 (76%)

Query: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63
           LR+PGG  +A +T+ L +LS+P+A   D+   F+ + K  C+F NGTERVR + RY +N+
Sbjct: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66

Query: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123
           EE  RFDSDVG +RAVT LG P AEYWNSQK++LE+ RA +DT CRHNY +    T+QRR
Sbjct: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126

Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
           V P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE TGVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186

Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
           FQ LVMLE  P+ G+VYTC VEHPS+ +P+ VEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 244 AGLFIYFRNQKGHSGLQPRG 263
            GL I+ R+QKG      RG
Sbjct: 247 LGLIIHHRSQKGEEPQGKRG 266


>gi|239740920 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 2 [Homo sapiens]
          Length = 261

 Score =  332 bits (851), Expect = 2e-91
 Identities = 161/252 (63%), Positives = 197/252 (78%)

Query: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63
           LR+PGG  +A +T+ L +LS+P+A   D+   F+ + K  C+F NGTERVR + RY +N+
Sbjct: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66

Query: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123
           EE  RFDSDVG +RAVT LG P AEYWNSQK++LE+ RA +DT CRHNY +    T+QRR
Sbjct: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126

Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
           V P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE TGVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186

Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
           FQ LVMLE  P+ G+VYTC VEHPS+ +P+ VEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 244 AGLFIYFRNQKG 255
            GL I+ R+QKG
Sbjct: 247 LGLIIHHRSQKG 258


>gi|24797076 major histocompatibility complex, class II, DP beta 1
           precursor [Homo sapiens]
          Length = 258

 Score =  318 bits (814), Expect = 4e-87
 Identities = 156/258 (60%), Positives = 191/258 (74%), Gaps = 2/258 (0%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
           M+ L++        LT  LMVL + +     T   +L + + EC+ FNGT+R   LERY 
Sbjct: 1   MMVLQVSAAPRTVALTALLMVLLTSVVQGRATPENYLFQGRQECYAFNGTQR--FLERYI 58

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
           +N+EE  RFDSDVGEFRAVTELGRP AEYWNSQKD+LE++RA  D  CRHNY +G   T+
Sbjct: 59  YNREEFARFDSDVGEFRAVTELGRPAAEYWNSQKDILEEKRAVPDRMCRHNYELGGPMTL 118

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRV P+V V PSK  PLQHHNLLVC V+ FYPGSI+VRWF NGQEE  GVVST LI NG
Sbjct: 119 QRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIRNG 178

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQ LVMLE  P+ G+VYTCQVEH S+ SP+TVEW+A+S+SA+SK L+G GGFVLGL+
Sbjct: 179 DWTFQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQSDSARSKTLTGAGGFVLGLI 238

Query: 241 FLGAGLFIYFRNQKGHSG 258
             G G+F++ R++K   G
Sbjct: 239 ICGVGIFMHRRSKKVQRG 256


>gi|4504403 major histocompatibility complex, class II, DO beta
           precursor [Homo sapiens]
          Length = 273

 Score =  288 bits (738), Expect = 3e-78
 Identities = 141/252 (55%), Positives = 179/252 (71%)

Query: 12  MAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQEENVRFDS 71
           +  L V L  L S +    D+   F+ + K +C+F NGTE+V+ + R+  N EE VRFDS
Sbjct: 9   VVALLVNLTRLDSSMTQGTDSPEDFVIQAKADCYFTNGTEKVQFVVRFIFNLEEYVRFDS 68

Query: 72  DVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRRVHPKVTVY 131
           DVG F A+T+LG+PDAE WNS+ DLLE+ R AVD  CRHNY +G  FTV R+V P+VTVY
Sbjct: 69  DVGMFVALTKLGQPDAEQWNSRLDLLERSRQAVDGVCRHNYRLGAPFTVGRKVQPEVTVY 128

Query: 132 PSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLE 191
           P +T  L  HNLL CSV+GFYPG I+++WF NGQEE+ GV+STG I NGDWTFQT+VMLE
Sbjct: 129 PERTPLLHQHNLLHCSVTGFYPGDIKIKWFLNGQEERAGVMSTGPIRNGDWTFQTVVMLE 188

Query: 192 TVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFR 251
             P  G VYTC V+H S+ SP++VEWRA+SE +  KMLSG+  F+LGL+FL  G+ I  R
Sbjct: 189 MTPELGHVYTCLVDHSSLLSPVSVEWRAQSEYSWRKMLSGIAAFLLGLIFLLVGIVIQLR 248

Query: 252 NQKGHSGLQPRG 263
            QKG+   Q  G
Sbjct: 249 AQKGYVRTQMSG 260


>gi|169168671 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 241

 Score =  255 bits (652), Expect = 2e-68
 Identities = 122/140 (87%), Positives = 128/140 (91%)

Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
           + PK T+YP+KT+PL H N LVCSVSGFYPGSIEVRWF+NGQEEK  VVS GLI NGDWT
Sbjct: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158

Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
           FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW AR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218

Query: 244 AGLFIYFRNQKGHSGLQPRG 263
            GLFIYFRNQKGHSGLQP G
Sbjct: 219 TGLFIYFRNQKGHSGLQPTG 238


>gi|169168589 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 140

 Score =  206 bits (524), Expect = 2e-53
 Identities = 99/123 (80%), Positives = 110/123 (89%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
           MVCL+LPGGSCMA LTVTL VLSSPLALAGDT+PRFLE+ K ECHF NGTERV  L RY 
Sbjct: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
           +NQEE  R++SD+GE++AVTELGRPDAEYWNSQKDLLE+RRA VDTYCR+NYGV ESFTV
Sbjct: 61  YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120

Query: 121 QRR 123
           QRR
Sbjct: 121 QRR 123


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,732,172
Number of Sequences: 37866
Number of extensions: 467561
Number of successful extensions: 1118
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 957
Number of HSP's gapped (non-prelim): 172
length of query: 266
length of database: 18,247,518
effective HSP length: 100
effective length of query: 166
effective length of database: 14,460,918
effective search space: 2400512388
effective search space used: 2400512388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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