Guide to the Human Genome
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Name: LOC100287346 Sequence: fasta or formatted (197aa) NCBI GI: 239745387
Description:

PREDICTED: hypothetical protein XP_002343486

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         13           2
 C cysteine            2.5          5           1
 D aspartate           6.1         12           6
 E glutamate          13.7         27           5
 F phenylalanine       2.0          4           1
 G glycine             8.6         17           2
 H histidine           2.0          4           1
 I isoleucine          0.5          1           1
 K lysine              1.5          3           1
 L leucine            13.2         26           4
 M methionine          2.0          4           1
 N asparagine          1.5          3           1
 P proline             9.1         18           3
 Q glutamine           3.0          6           1
 R arginine            8.6         17           2
 S serine              8.1         16           2
 T threonine           6.1         12           4
 V valine              2.0          4           1
 W tryptophan          2.5          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343486 
LOC100291923          1.000   PREDICTED: hypothetical protein XP_002344991 
LOC100291342          0.930   PREDICTED: hypothetical protein XP_002347636 
TTBK1                 0.054   tau tubulin kinase 1 
CASZ1                 0.052   castor homolog 1, zinc finger isoform a 
PCGF6                 0.049   polycomb group ring finger 6 isoform a 
PCGF6                 0.049   polycomb group ring finger 6 isoform b 
RBM28                 0.049   RNA binding motif protein 28 
MYT1                  0.049   myelin transcription factor 1 
MYST4                 0.049   MYST histone acetyltransferase (monocytic leukemia)...
HMGB1                 0.047   high-mobility group box 1 
LAS1L                 0.047   LAS1-like 
NCL                   0.044   nucleolin 
LOC645490             0.044   PREDICTED: similar to hCG1991922 
FBXO3                 0.044   F-box only protein 3 isoform 1 
HMGB1L1               0.044   high-mobility group box 1-like 1 
ANP32B                0.044   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
ATAD2                 0.044   ATPase family, AAA domain containing 2 
C14orf37              0.044   hypothetical protein LOC145407 
C11orf60              0.041   IFT46 
SETD1B                0.041   SET domain containing 1B 
RANGAP1               0.041   Ran GTPase activating protein 1 
BRD2                  0.039   bromodomain containing 2 
BRD2                  0.039   bromodomain containing 2 
YTHDC1                0.039   splicing factor YT521-B isoform 2 
YTHDC1                0.039   splicing factor YT521-B isoform 1 
DCAF8L2               0.039   DDB1 and CUL4 associated factor 8-like 2 
LOC645490             0.039   PREDICTED: similar to hCG1991922 
LOC645490             0.039   PREDICTED: similar to hCG1991922 
LOC728792             0.039   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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