Guide to the Human Genome
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Search of human proteins with 239743770

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743770 PREDICTED: hypothetical protein XP_002342956 [Homo
sapiens]
         (149 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169217799 PREDICTED: hypothetical protein [Homo sapiens]           310   2e-85
gi|239752508 PREDICTED: hypothetical protein XP_002347011 [Homo ...   310   2e-85
gi|239743770 PREDICTED: hypothetical protein XP_002342956 [Homo ...   310   2e-85
gi|90669228 deleted in lung and esophageal cancer 1 isoform DLEC...    37   0.006
gi|90669194 deleted in lung and esophageal cancer 1 isoform DLEC...    37   0.006
gi|83367077 mucin 16 [Homo sapiens]                                    33   0.12 
gi|4506401 v-raf-1 murine leukemia viral oncogene homolog 1 [Hom...    32   0.26 
gi|54112407 protein kinase CHK2 isoform c [Homo sapiens]               31   0.34 
gi|22209009 protein kinase CHK2 isoform b [Homo sapiens]               31   0.34 
gi|6005850 protein kinase CHK2 isoform a [Homo sapiens]                31   0.34 
gi|4505151 Meis homeobox 1 [Homo sapiens]                              30   0.58 
gi|197304733 cytochrome b-561 domain containing 1 isoform 5 [Hom...    30   0.58 
gi|197304731 cytochrome b-561 domain containing 1 isoform 4 [Hom...    30   0.58 
gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Hom...    30   0.58 
gi|154689847 hypothetical protein LOC9851 [Homo sapiens]               29   1.7  
gi|148746218 TAO kinase 3 [Homo sapiens]                               28   2.2  
gi|195947382 Rab interacting lysosomal protein-like 1 [Homo sapi...    28   2.2  
gi|226246533 TOX high mobility group box family member 3 isoform...    28   2.9  
gi|226054295 TOX high mobility group box family member 3 isoform...    28   2.9  
gi|4504919 keratin 8 [Homo sapiens]                                    28   3.7  
gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sap...    28   3.7  
gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sap...    28   3.7  
gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sap...    28   3.7  
gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapi...    28   3.7  
gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithora...    27   4.9  
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ...    27   4.9  
gi|55770834 centromere protein F [Homo sapiens]                        27   4.9  
gi|15812226 transcriptional regulating factor 1 [Homo sapiens]         27   4.9  
gi|13129124 caspase recruitment domain protein 14 isoform 1 [Hom...    27   4.9  
gi|38788416 laminin, alpha 1 precursor [Homo sapiens]                  27   6.4  

>gi|169217799 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 149

 Score =  310 bits (795), Expect = 2e-85
 Identities = 149/149 (100%), Positives = 149/149 (100%)

Query: 1   MHRTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKS 60
           MHRTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKS
Sbjct: 1   MHRTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKS 60

Query: 61  NASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHKIQ 120
           NASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHKIQ
Sbjct: 61  NASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHKIQ 120

Query: 121 VMKTLLIKQVAVKKPAKAHQNQGGHESDL 149
           VMKTLLIKQVAVKKPAKAHQNQGGHESDL
Sbjct: 121 VMKTLLIKQVAVKKPAKAHQNQGGHESDL 149


>gi|239752508 PREDICTED: hypothetical protein XP_002347011 [Homo
           sapiens]
          Length = 149

 Score =  310 bits (795), Expect = 2e-85
 Identities = 149/149 (100%), Positives = 149/149 (100%)

Query: 1   MHRTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKS 60
           MHRTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKS
Sbjct: 1   MHRTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKS 60

Query: 61  NASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHKIQ 120
           NASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHKIQ
Sbjct: 61  NASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHKIQ 120

Query: 121 VMKTLLIKQVAVKKPAKAHQNQGGHESDL 149
           VMKTLLIKQVAVKKPAKAHQNQGGHESDL
Sbjct: 121 VMKTLLIKQVAVKKPAKAHQNQGGHESDL 149


>gi|239743770 PREDICTED: hypothetical protein XP_002342956 [Homo
           sapiens]
          Length = 149

 Score =  310 bits (795), Expect = 2e-85
 Identities = 149/149 (100%), Positives = 149/149 (100%)

Query: 1   MHRTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKS 60
           MHRTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKS
Sbjct: 1   MHRTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKS 60

Query: 61  NASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHKIQ 120
           NASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHKIQ
Sbjct: 61  NASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHKIQ 120

Query: 121 VMKTLLIKQVAVKKPAKAHQNQGGHESDL 149
           VMKTLLIKQVAVKKPAKAHQNQGGHESDL
Sbjct: 121 VMKTLLIKQVAVKKPAKAHQNQGGHESDL 149


>gi|90669228 deleted in lung and esophageal cancer 1 isoform
           DLEC1-S3 [Homo sapiens]
          Length = 1778

 Score = 37.0 bits (84), Expect = 0.006
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 3   RTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKSNA 62
           R+S+   S A+R+  C    QG+ W+   P   +S P QP++ +   + +        + 
Sbjct: 4   RSSKTRRSLASRTNEC----QGTMWAPTSPPAGSSSPSQPTWKSSLYSSLAYSEAFHYSF 59

Query: 63  SQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRH 106
           +     + ++ + +  EP+ L         RLRP+ L +Q+  H
Sbjct: 60  AARPRRLTQLALAQRPEPQLL---------RLRPSSLRTQDISH 94


>gi|90669194 deleted in lung and esophageal cancer 1 isoform
           DLEC1-N1 [Homo sapiens]
          Length = 1755

 Score = 37.0 bits (84), Expect = 0.006
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 3   RTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKSNA 62
           R+S+   S A+R+  C    QG+ W+   P   +S P QP++ +   + +        + 
Sbjct: 4   RSSKTRRSLASRTNEC----QGTMWAPTSPPAGSSSPSQPTWKSSLYSSLAYSEAFHYSF 59

Query: 63  SQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRH 106
           +     + ++ + +  EP+ L         RLRP+ L +Q+  H
Sbjct: 60  AARPRRLTQLALAQRPEPQLL---------RLRPSSLRTQDISH 94


>gi|83367077 mucin 16 [Homo sapiens]
          Length = 14507

 Score = 32.7 bits (73), Expect = 0.12
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 8/76 (10%)

Query: 25   STW----SSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKSNASQAQWLMPEIPMPETLEP 80
            STW    SS    P+       ++S +RVT   ++ T +++    +W MP +P   +L P
Sbjct: 1148 STWLGILSSSPSSPTPKVTMSSTFSTQRVTTSMIMDTVETS----RWNMPNLPSTTSLTP 1203

Query: 81   EQLHLEQELGKMRLRP 96
              +     +GK  L P
Sbjct: 1204 SNIPTSGAIGKSTLVP 1219


>gi|4506401 v-raf-1 murine leukemia viral oncogene homolog 1 [Homo
           sapiens]
          Length = 648

 Score = 31.6 bits (70), Expect = 0.26
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 8/96 (8%)

Query: 15  SQWCLAIQQGSTWSSQEPWPSTSWP------EQPSYSNKRVTKMGMLSTSKSNASQAQWL 68
           S+  L+ +Q ST +      ST+ P      E    S+        LS+S +N S   W 
Sbjct: 247 SEGSLSQRQRSTSTPNVHMVSTTLPVDSRMIEDAIRSHSESASPSALSSSPNNLSPTGWS 306

Query: 69  MPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEF 104
            P+ P+P   E   +   QE  K ++RP G     +
Sbjct: 307 QPKTPVPAQRERAPVSGTQE--KNKIRPRGQRDSSY 340


>gi|54112407 protein kinase CHK2 isoform c [Homo sapiens]
          Length = 586

 Score = 31.2 bits (69), Expect = 0.34
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 10 SAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKSNASQAQWLM 69
          SA ++    +   QGS+  SQ    S+S    P+ S    +  G LS+ ++ ++Q  + +
Sbjct: 16 SACSQPHGSVTQSQGSSSQSQGI-SSSSTSTMPNSSQSSHSSSGTLSSLETVSTQELYSI 74

Query: 70 PEIPMPETLEPEQ 82
          PE   PE  EPE+
Sbjct: 75 PEDQEPEDQEPEE 87


>gi|22209009 protein kinase CHK2 isoform b [Homo sapiens]
          Length = 514

 Score = 31.2 bits (69), Expect = 0.34
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 10 SAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKSNASQAQWLM 69
          SA ++    +   QGS+  SQ    S+S    P+ S    +  G LS+ ++ ++Q  + +
Sbjct: 16 SACSQPHGSVTQSQGSSSQSQGI-SSSSTSTMPNSSQSSHSSSGTLSSLETVSTQELYSI 74

Query: 70 PEIPMPETLEPEQ 82
          PE   PE  EPE+
Sbjct: 75 PEDQEPEDQEPEE 87


>gi|6005850 protein kinase CHK2 isoform a [Homo sapiens]
          Length = 543

 Score = 31.2 bits (69), Expect = 0.34
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 10 SAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKSNASQAQWLM 69
          SA ++    +   QGS+  SQ    S+S    P+ S    +  G LS+ ++ ++Q  + +
Sbjct: 16 SACSQPHGSVTQSQGSSSQSQGI-SSSSTSTMPNSSQSSHSSSGTLSSLETVSTQELYSI 74

Query: 70 PEIPMPETLEPEQ 82
          PE   PE  EPE+
Sbjct: 75 PEDQEPEDQEPEE 87


>gi|4505151 Meis homeobox 1 [Homo sapiens]
          Length = 390

 Score = 30.4 bits (67), Expect = 0.58
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 22  QQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKSNASQAQWLMPEIPMPETLEPE 81
           +QG    +    PST   + P    KR  K G+     +N  +A WL   +  P   E +
Sbjct: 246 EQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRA-WLFQHLTHPYPSEEQ 304

Query: 82  QLHLEQELG 90
           +  L Q+ G
Sbjct: 305 KKQLAQDTG 313


>gi|197304733 cytochrome b-561 domain containing 1 isoform 5 [Homo
          sapiens]
          Length = 128

 Score = 30.4 bits (67), Expect = 0.58
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 50 TKMGMLSTSKSNASQAQWLMPEIP 73
          TK G L   +S   +A+W+MPEIP
Sbjct: 49 TKTGPLMEDRSEGGRARWVMPEIP 72


>gi|197304731 cytochrome b-561 domain containing 1 isoform 4 [Homo
          sapiens]
          Length = 133

 Score = 30.4 bits (67), Expect = 0.58
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 50 TKMGMLSTSKSNASQAQWLMPEIP 73
          TK G L   +S   +A+W+MPEIP
Sbjct: 49 TKTGPLMEDRSEGGRARWVMPEIP 72


>gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Homo
          sapiens]
          Length = 251

 Score = 30.4 bits (67), Expect = 0.58
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 50 TKMGMLSTSKSNASQAQWLMPEIP 73
          TK G L   +S   +A+W+MPEIP
Sbjct: 49 TKTGPLMEDRSEGGRARWVMPEIP 72


>gi|154689847 hypothetical protein LOC9851 [Homo sapiens]
          Length = 967

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 31  EPWPSTSWPEQPSYSNKRVTKMGMLSTSKSNASQAQWLMPEIPMPETLEPEQLHLEQEL 89
           E WPSTS    P    + +T         S  S A+ L+ +   P+T  PE   L+ EL
Sbjct: 403 ERWPSTS----PKGERRPLTAKDTFPQETSRPSVAKQLLADKYQPDTELPETQRLQSEL 457


>gi|148746218 TAO kinase 3 [Homo sapiens]
          Length = 898

 Score = 28.5 bits (62), Expect = 2.2
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 79  EPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGR--HKIQVMKTLLIK 128
           E EQ ++ +EL K R +    H+   RH +S  E+  R  H +Q ++  LI+
Sbjct: 625 EVEQQNIREELNKKRTQKEMEHAMLIRHDESTRELEYRQLHTLQKLRMDLIR 676


>gi|195947382 Rab interacting lysosomal protein-like 1 [Homo
           sapiens]
          Length = 403

 Score = 28.5 bits (62), Expect = 2.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 76  ETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIG 114
           +T E E   L  ELGK+R R  G HSQ        + +G
Sbjct: 234 QTKEQEMGSLRAELGKLRERLQGEHSQNGEEEPETEPVG 272


>gi|226246533 TOX high mobility group box family member 3 isoform 2
           [Homo sapiens]
          Length = 571

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 74  MPETLEPEQLHLEQELGKMRLR---PAGLHSQEFRHSKSQDEIGGRHKIQVMKTLLIKQV 130
           M + L+ +Q HL+Q++ + +L+      L  Q+ +H + Q +   R    V   +     
Sbjct: 481 MQQHLQQQQQHLQQQINQQQLQQQLQQRLQLQQLQHMQHQSQPSPRQHSPVASQITSPIP 540

Query: 131 AVKKPAKAHQNQGGHESDL 149
           A+  P  A Q    H+S +
Sbjct: 541 AIGSPQPASQQ---HQSQI 556


>gi|226054295 TOX high mobility group box family member 3 isoform 1
           [Homo sapiens]
          Length = 576

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 74  MPETLEPEQLHLEQELGKMRLR---PAGLHSQEFRHSKSQDEIGGRHKIQVMKTLLIKQV 130
           M + L+ +Q HL+Q++ + +L+      L  Q+ +H + Q +   R    V   +     
Sbjct: 486 MQQHLQQQQQHLQQQINQQQLQQQLQQRLQLQQLQHMQHQSQPSPRQHSPVASQITSPIP 545

Query: 131 AVKKPAKAHQNQGGHESDL 149
           A+  P  A Q    H+S +
Sbjct: 546 AIGSPQPASQQ---HQSQI 561


>gi|4504919 keratin 8 [Homo sapiens]
          Length = 483

 Score = 27.7 bits (60), Expect = 3.7
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 6/55 (10%)

Query: 76  ETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHKIQVMKTLLIKQV 130
           ETL  E+L LE ELG M+    GL  ++F+ +K +DEI  R +++    L+ K V
Sbjct: 152 ETLGQEKLKLEAELGNMQ----GL-VEDFK-NKYEDEINKRTEMENEFVLIKKDV 200


>gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo
           sapiens]
          Length = 1293

 Score = 27.7 bits (60), Expect = 3.7
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 9/84 (10%)

Query: 59  KSNASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHK 118
           K     A+W   E      LE  +L +E+E  ++R      H +E R  K   E+  + +
Sbjct: 836 KQEEEAAKWAREEEEAQRRLEENRLRMEEEAARLR------HEEEERKRK---ELEVQRQ 886

Query: 119 IQVMKTLLIKQVAVKKPAKAHQNQ 142
            ++M+    +Q A+++  +  Q Q
Sbjct: 887 KELMRQRQQQQEALRRLQQQQQQQ 910


>gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo
           sapiens]
          Length = 1320

 Score = 27.7 bits (60), Expect = 3.7
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 9/84 (10%)

Query: 59  KSNASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHK 118
           K     A+W   E      LE  +L +E+E  ++R      H +E R  K   E+  + +
Sbjct: 863 KQEEEAAKWAREEEEAQRRLEENRLRMEEEAARLR------HEEEERKRK---ELEVQRQ 913

Query: 119 IQVMKTLLIKQVAVKKPAKAHQNQ 142
            ++M+    +Q A+++  +  Q Q
Sbjct: 914 KELMRQRQQQQEALRRLQQQQQQQ 937


>gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo
           sapiens]
          Length = 1299

 Score = 27.7 bits (60), Expect = 3.7
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 9/84 (10%)

Query: 59  KSNASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHK 118
           K     A+W   E      LE  +L +E+E  ++R      H +E R  K   E+  + +
Sbjct: 842 KQEEEAAKWAREEEEAQRRLEENRLRMEEEAARLR------HEEEERKRK---ELEVQRQ 892

Query: 119 IQVMKTLLIKQVAVKKPAKAHQNQ 142
            ++M+    +Q A+++  +  Q Q
Sbjct: 893 KELMRQRQQQQEALRRLQQQQQQQ 916


>gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo
           sapiens]
          Length = 1299

 Score = 27.7 bits (60), Expect = 3.7
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 9/84 (10%)

Query: 59  KSNASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHK 118
           K     A+W   E      LE  +L +E+E  ++R      H +E R  K   E+  + +
Sbjct: 842 KQEEEAAKWAREEEEAQRRLEENRLRMEEEAARLR------HEEEERKRK---ELEVQRQ 892

Query: 119 IQVMKTLLIKQVAVKKPAKAHQNQ 142
            ++M+    +Q A+++  +  Q Q
Sbjct: 893 KELMRQRQQQQEALRRLQQQQQQQ 916


>gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithorax
            homolog, Drosophila); translocated to, 4 isoform 1 [Homo
            sapiens]
          Length = 1834

 Score = 27.3 bits (59), Expect = 4.9
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 64   QAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDE 112
            +A+  MP I + + L+ E+   +Q+L +MR R A   +++    + Q+E
Sbjct: 1601 RARTAMPAISVLDLLQDEERRRQQQLEEMRKREAEDRARQEEERRRQEE 1649


>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
           sapiens]
          Length = 1362

 Score = 27.3 bits (59), Expect = 4.9
 Identities = 15/50 (30%), Positives = 21/50 (42%)

Query: 39  PEQPSYSNKRVTKMGMLSTSKSNASQAQWLMPEIPMPETLEPEQLHLEQE 88
           P+QPS  + R   +          S A    P +P P   +P Q+ LE E
Sbjct: 867 PQQPSRPSNRAAALPPKPARPPAVSPALTQTPLLPQPPMAQPPQVLLEDE 916


>gi|55770834 centromere protein F [Homo sapiens]
          Length = 3114

 Score = 27.3 bits (59), Expect = 4.9
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 76   ETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHK 118
            E  + EQL LE E+ +++L+   L S+      ++D I GR++
Sbjct: 1627 EKKQTEQLSLELEVARLQLQGLDLSSRSLLGIDTEDAIQGRNE 1669


>gi|15812226 transcriptional regulating factor 1 [Homo sapiens]
          Length = 1200

 Score = 27.3 bits (59), Expect = 4.9
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 10/71 (14%)

Query: 39  PEQPSYSNKRVTKMGMLSTSKSNASQAQWLMPEIPMPETLEPEQLHLEQELGKMRL---- 94
           P+Q   + ++   M  + T       +Q   P+ P P+  +P+QL L+Q  G M++    
Sbjct: 272 PQQQQQAGQQRISMQEIQTQPQQIRPSQ---PQ-PPPQQQQPQQLQLQQRQGSMQIPQYY 327

Query: 95  --RPAGLHSQE 103
             +P   H QE
Sbjct: 328 QPQPMMQHLQE 338


>gi|13129124 caspase recruitment domain protein 14 isoform 1 [Homo
           sapiens]
          Length = 1004

 Score = 27.3 bits (59), Expect = 4.9
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 53  GMLSTSKSN-------ASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFR 105
           G++ TSK          S  + L  E    E L      L++ LG    R  GLH  E  
Sbjct: 117 GLMETSKLTECLAGAIGSLQEELNQEKGQKEVLLRRCQQLQEHLGLAETRAEGLHQLEAD 176

Query: 106 HSKSQDEIGGR-HKIQVMK 123
           HS+ + E+    H++  +K
Sbjct: 177 HSRMKREVSAHFHEVLRLK 195


>gi|38788416 laminin, alpha 1 precursor [Homo sapiens]
          Length = 3075

 Score = 26.9 bits (58), Expect = 6.4
 Identities = 9/24 (37%), Positives = 18/24 (75%)

Query: 110 QDEIGGRHKIQVMKTLLIKQVAVK 133
           QD +GGRH++ +  T +++++A K
Sbjct: 543 QDALGGRHQVSINNTAVMQRLAPK 566


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.123    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,308,073
Number of Sequences: 37866
Number of extensions: 279859
Number of successful extensions: 760
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 738
Number of HSP's gapped (non-prelim): 40
length of query: 149
length of database: 18,247,518
effective HSP length: 93
effective length of query: 56
effective length of database: 14,725,980
effective search space: 824654880
effective search space used: 824654880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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