Guide to the Human Genome
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Name: LOC100287767 Sequence: fasta or formatted (156aa) NCBI GI: 239742871
Description:

PREDICTED: hypothetical protein XP_002342668

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            19.2         30           3
 C cysteine            0.6          1           1
 D aspartate           5.1          8           1
 E glutamate           4.5          7           1
 F phenylalanine       1.3          2           1
 G glycine            16.7         26           2
 H histidine           1.9          3           2
 I isoleucine          2.6          4           2
 K lysine              1.9          3           1
 L leucine             5.8          9           1
 M methionine          2.6          4           1
 N asparagine          1.3          2           1
 P proline             6.4         10           1
 Q glutamine           5.8          9           2
 R arginine            8.3         13           2
 S serine              1.3          2           1
 T threonine           1.3          2           1
 V valine             13.5         21           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342668 
LOC100291588          1.000   PREDICTED: hypothetical protein XP_002345935 
LOC100290285          1.000   PREDICTED: hypothetical protein XP_002346836 
HECA                  0.060   headcase 
ARID1B                0.057   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.057   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.057   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
KAT2B                 0.050   K(lysine) acetyltransferase 2B 
RNF112                0.050   ring finger protein 112 
ELN                   0.046   elastin isoform e precursor 
ELN                   0.046   elastin isoform d precursor 
ELN                   0.046   elastin isoform c precursor 
ELN                   0.046   elastin isoform b precursor 
ELN                   0.046   elastin isoform a precursor 
PHOX2B                0.043   paired-like homeobox 2b 
RASA1                 0.043   RAS p21 protein activator 1 isoform 1 
ZIC2                  0.043   zinc finger protein of the cerebellum 2 
EN1                   0.039   engrailed homeobox 1 
ZSWIM6                0.039   zinc finger, SWIM-type containing 6 
MAZ                   0.039   MYC-associated zinc finger protein isoform 2 
MAZ                   0.039   MYC-associated zinc finger protein isoform 1 
LOC728767             0.039   PREDICTED: hypothetical protein 
LOC728767             0.039   PREDICTED: hypothetical protein 
FLJ10357              0.039   hypothetical protein LOC55701 
TSC22D1               0.036   TSC22 domain family, member 1 isoform 1 
ACCN1                 0.036   amiloride-sensitive cation channel 1, neuronal isofo...
LOC100129410          0.036   PREDICTED: hypothetical protein 
LOC100129410          0.036   PREDICTED: hypothetical protein 
LOC100129410          0.036   PREDICTED: hypothetical protein 
UBE2Z                 0.036   ubiquitin-conjugating enzyme E2Z 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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