Search of human proteins with 239740855

Search of human proteins with 239740855

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239740855 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 1 [Homo sapiens]
         (267 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239740855 PREDICTED: similar to major histocompatibility comp...   549   e-156
gi|239740853 PREDICTED: similar to major histocompatibility comp...   531   e-151
gi|17986005 major histocompatibility complex, class II, DR beta ...   504   e-143
gi|239740859 PREDICTED: similar to major histocompatibility comp...   501   e-142
gi|239740857 PREDICTED: similar to major histocompatibility comp...   485   e-137
gi|239740745 PREDICTED: similar to HLA class II histocompatibili...   483   e-137
gi|239740695 PREDICTED: similar to HLA class II histocompatibili...   483   e-137
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ...   482   e-136
gi|155030211 major histocompatibility complex, class II, DR beta...   479   e-135
gi|239748785 PREDICTED: similar to HLA class II histocompatibili...   469   e-133
gi|18641375 major histocompatibility complex, class II, DR beta ...   461   e-130
gi|52630344 major histocompatibility complex, class II, DR beta ...   456   e-129
gi|239740743 PREDICTED: similar to HLA class II histocompatibili...   436   e-123
gi|239740693 PREDICTED: similar to HLA class II histocompatibili...   436   e-123
gi|239758090 PREDICTED: major histocompatibility complex, class ...   413   e-116
gi|239758092 PREDICTED: similar to HLA class II histocompatibili...   411   e-115
gi|169217452 PREDICTED: similar to HLA class II histocompatibili...   336   1e-92
gi|150418002 major histocompatibility complex, class II, DQ beta...   326   1e-89
gi|239758095 PREDICTED: similar to major histocompatibility comp...   326   1e-89
gi|239740749 PREDICTED: similar to major histocompatibility comp...   326   1e-89
gi|239748788 PREDICTED: similar to major histocompatibility comp...   324   4e-89
gi|169168591 PREDICTED: similar to major histocompatibility comp...   324   6e-89
gi|239740863 PREDICTED: similar to major histocompatibility comp...   323   7e-89
gi|239513955 PREDICTED: similar to major histocompatibility comp...   323   7e-89
gi|239740920 PREDICTED: similar to major histocompatibility comp...   319   2e-87
gi|239740918 PREDICTED: similar to major histocompatibility comp...   319   2e-87
gi|24797076 major histocompatibility complex, class II, DP beta ...   316   1e-86
gi|4504403 major histocompatibility complex, class II, DO beta p...   282   2e-76
gi|169168671 PREDICTED: similar to MHC class II antigen [Homo sa...   263   2e-70
gi|169168589 PREDICTED: similar to MHC class II antigen [Homo sa...   181   8e-46

>gi|239740855 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  549 bits (1414), Expect = e-156
 Identities = 267/267 (100%), Positives = 267/267 (100%)

Query: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60
           MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH
Sbjct: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60

Query: 61  FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120
           FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT
Sbjct: 61  FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120

Query: 121 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 180
           VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN
Sbjct: 121 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 180

Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 240
           GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL
Sbjct: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 240

Query: 241 LFLGAGLFIYFRNQKGHSGLQPTGFLS 267
           LFLGAGLFIYFRNQKGHSGLQPTGFLS
Sbjct: 241 LFLGAGLFIYFRNQKGHSGLQPTGFLS 267


>gi|239740853 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  531 bits (1367), Expect = e-151
 Identities = 262/267 (98%), Positives = 263/267 (98%), Gaps = 1/267 (0%)

Query: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60
           MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTR +  L LLKSECHFFNGTERVRFLERH
Sbjct: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRF-LELLKSECHFFNGTERVRFLERH 59

Query: 61  FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120
           FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT
Sbjct: 60  FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 119

Query: 121 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 180
           VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN
Sbjct: 120 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 179

Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 240
           GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL
Sbjct: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 239

Query: 241 LFLGAGLFIYFRNQKGHSGLQPTGFLS 267
           LFLGAGLFIYFRNQKGHSGLQPTGFLS
Sbjct: 240 LFLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|17986005 major histocompatibility complex, class II, DR beta 3
           precursor [Homo sapiens]
          Length = 266

 Score =  504 bits (1299), Expect = e-143
 Identities = 250/267 (93%), Positives = 256/267 (95%), Gaps = 1/267 (0%)

Query: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60
           MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTR +  L L KSECHFFNGTERVR+L+R+
Sbjct: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRF-LELRKSECHFFNGTERVRYLDRY 59

Query: 61  FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120
           FHNQEE+ RFDSDVGEYRAV ELGRP AE WNSQKDLLEQKRG+VDNYCRHNYGVGESFT
Sbjct: 60  FHNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFT 119

Query: 121 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 180
           VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN
Sbjct: 120 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 179

Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 240
           GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS LTVEW ARSESAQSKMLSGVGGFVLGL
Sbjct: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWRARSESAQSKMLSGVGGFVLGL 239

Query: 241 LFLGAGLFIYFRNQKGHSGLQPTGFLS 267
           LFLGAGLFIYFRNQKGHSGLQPTGFLS
Sbjct: 240 LFLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239740859 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  501 bits (1291), Expect = e-142
 Identities = 242/267 (90%), Positives = 252/267 (94%)

Query: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60
           MVCL+LPGGS +A LTVTLMVLSS LA AGDTRRK TLW+  SECHFFNGTERVR+L+R+
Sbjct: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60

Query: 61  FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120
           FHNQEE  RFDSDVGE+RAV ELGRPDAEYWNSQKDLLEQKRG+VDNYCRHNYGV ESFT
Sbjct: 61  FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120

Query: 121 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 180
           VQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI N
Sbjct: 121 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 180

Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 240
           GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW ARSESAQSKMLSGVGGFVLGL
Sbjct: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 240

Query: 241 LFLGAGLFIYFRNQKGHSGLQPTGFLS 267
           LFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 LFLGAGLFIYFRNQKGHSGLQPRGFLS 267


>gi|239740857 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  485 bits (1248), Expect = e-137
 Identities = 238/267 (89%), Positives = 248/267 (92%), Gaps = 1/267 (0%)

Query: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60
           MVCL+LPGGS +A LTVTLMVLSS LA AGDTR +  L    SECHFFNGTERVR+L+R+
Sbjct: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRF-LEYSTSECHFFNGTERVRYLDRY 59

Query: 61  FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120
           FHNQEE  RFDSDVGE+RAV ELGRPDAEYWNSQKDLLEQKRG+VDNYCRHNYGV ESFT
Sbjct: 60  FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 119

Query: 121 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 180
           VQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI N
Sbjct: 120 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 179

Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 240
           GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW ARSESAQSKMLSGVGGFVLGL
Sbjct: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 239

Query: 241 LFLGAGLFIYFRNQKGHSGLQPTGFLS 267
           LFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 240 LFLGAGLFIYFRNQKGHSGLQPRGFLS 266


>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  483 bits (1242), Expect = e-137
 Identities = 238/267 (89%), Positives = 248/267 (92%), Gaps = 1/267 (0%)

Query: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60
           MVCLKLPGGS +AALTVTLMVLSS LA AGDT+ +  LW  K +CHFFNGTERV+FLER 
Sbjct: 1   MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRF-LWQGKYKCHFFNGTERVQFLERL 59

Query: 61  FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120
           F+NQEE+ RFDSDVGEYRAV ELGRP AE WNSQKD+LE +RGQVD  CRHNYGVGESFT
Sbjct: 60  FYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFT 119

Query: 121 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 180
           VQRRVHP+VTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN
Sbjct: 120 VQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 179

Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 240
           GDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEW ARSESAQSKMLSGVGGFVLGL
Sbjct: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGL 239

Query: 241 LFLGAGLFIYFRNQKGHSGLQPTGFLS 267
           LFLGAGLFIYFRNQKGHSGLQPTGFLS
Sbjct: 240 LFLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  483 bits (1242), Expect = e-137
 Identities = 238/267 (89%), Positives = 248/267 (92%), Gaps = 1/267 (0%)

Query: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60
           MVCLKLPGGS +AALTVTLMVLSS LA AGDT+ +  LW  K +CHFFNGTERV+FLER 
Sbjct: 1   MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRF-LWQGKYKCHFFNGTERVQFLERL 59

Query: 61  FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120
           F+NQEE+ RFDSDVGEYRAV ELGRP AE WNSQKD+LE +RGQVD  CRHNYGVGESFT
Sbjct: 60  FYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFT 119

Query: 121 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 180
           VQRRVHP+VTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN
Sbjct: 120 VQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 179

Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 240
           GDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEW ARSESAQSKMLSGVGGFVLGL
Sbjct: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGL 239

Query: 241 LFLGAGLFIYFRNQKGHSGLQPTGFLS 267
           LFLGAGLFIYFRNQKGHSGLQPTGFLS
Sbjct: 240 LFLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
           sapiens]
          Length = 266

 Score =  482 bits (1241), Expect = e-136
 Identities = 237/267 (88%), Positives = 246/267 (92%), Gaps = 1/267 (0%)

Query: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60
           MVCL+LPGGS +A LTVTLMVLSS LA AGDTR +  L  +K ECHFFNGTERVR LER+
Sbjct: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRF-LEEVKFECHFFNGTERVRLLERY 59

Query: 61  FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120
           FHNQEE  RFDSDVGE+RAV ELGRPDAEYWNSQKDLLEQ+R  VD YCRHNYGVGESFT
Sbjct: 60  FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFT 119

Query: 121 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 180
           VQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI N
Sbjct: 120 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 179

Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 240
           GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW ARSESAQSKMLSGVGGFVLGL
Sbjct: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 239

Query: 241 LFLGAGLFIYFRNQKGHSGLQPTGFLS 267
           LFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 240 LFLGAGLFIYFRNQKGHSGLQPRGFLS 266


>gi|155030211 major histocompatibility complex, class II, DR beta 1
           precursor [Homo sapiens]
          Length = 266

 Score =  479 bits (1233), Expect = e-135
 Identities = 235/267 (88%), Positives = 246/267 (92%), Gaps = 1/267 (0%)

Query: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60
           MVCLKLPGGS + ALTVTLMVLSS LA +GDTR +  LW  K ECHFFNGTERVRFL+R+
Sbjct: 1   MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRF-LWQPKRECHFFNGTERVRFLDRY 59

Query: 61  FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120
           F+NQEE  RFDSDVGE+RAV ELGRPDAEYWNSQKD+LEQ R  VD YCRHNYGV ESFT
Sbjct: 60  FYNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFT 119

Query: 121 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 180
           VQRRV P+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWF NGQEEKAG+VSTGLIQN
Sbjct: 120 VQRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQN 179

Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 240
           GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW ARSESAQSKMLSGVGGFVLGL
Sbjct: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 239

Query: 241 LFLGAGLFIYFRNQKGHSGLQPTGFLS 267
           LFLGAGLFIYFRNQKGHSGLQPTGFLS
Sbjct: 240 LFLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-9 beta chain [Homo sapiens]
          Length = 266

 Score =  469 bits (1208), Expect = e-133
 Identities = 234/267 (87%), Positives = 243/267 (91%), Gaps = 1/267 (0%)

Query: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60
           MVCLKLPGGS +AALTVTLMVLSS LA AGDT+ +  L   K ECHFFNGTERVR+L R 
Sbjct: 1   MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRF-LKQDKFECHFFNGTERVRYLHRG 59

Query: 61  FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120
            +NQEE  RFDSDVGEYRAV ELGRP AE WNSQKD LE++R +VD  CRHNYGVGESFT
Sbjct: 60  IYNQEENVRFDSDVGEYRAVTELGRPVAESWNSQKDFLERRRAEVDTVCRHNYGVGESFT 119

Query: 121 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 180
           VQRRVHP+VTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN
Sbjct: 120 VQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 179

Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 240
           GDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEW ARSESAQSKMLSGVGGFVLGL
Sbjct: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGL 239

Query: 241 LFLGAGLFIYFRNQKGHSGLQPTGFLS 267
           LFLGAGLFIYFRNQKGHSGLQPTGFLS
Sbjct: 240 LFLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|18641375 major histocompatibility complex, class II, DR beta 5
           precursor [Homo sapiens]
          Length = 266

 Score =  461 bits (1187), Expect = e-130
 Identities = 229/267 (85%), Positives = 239/267 (89%), Gaps = 1/267 (0%)

Query: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60
           MVCLKLPGGS +A LTVTLMVLSS LA AGDTR +  L   K ECHFFNGTERVRFL R 
Sbjct: 1   MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRF-LQQDKYECHFFNGTERVRFLHRD 59

Query: 61  FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120
            +NQEE  RFDSDVGEYRAV ELGRPDAEYWNSQKD LE +R  VD YCRHNYGVGESFT
Sbjct: 60  IYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFT 119

Query: 121 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 180
           VQRRV P+VTVYPA+TQ LQHHNLLVCSV+GFYPGSIEVRWFRN QEEKAGVVSTGLIQN
Sbjct: 120 VQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQN 179

Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 240
           GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW A+SESAQSKMLSGVGGFVLGL
Sbjct: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGL 239

Query: 241 LFLGAGLFIYFRNQKGHSGLQPTGFLS 267
           LFLGAGLFIYF+NQKGHSGL PTG +S
Sbjct: 240 LFLGAGLFIYFKNQKGHSGLHPTGLVS 266


>gi|52630344 major histocompatibility complex, class II, DR beta 4
           precursor [Homo sapiens]
          Length = 266

 Score =  456 bits (1174), Expect = e-129
 Identities = 225/267 (84%), Positives = 243/267 (91%), Gaps = 1/267 (0%)

Query: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60
           MVCLKLPGGS +AALTVTL VLSS LA AGDT+ +  L   K ECHF NGTERV  L R+
Sbjct: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRF-LEQAKCECHFLNGTERVWNLIRY 59

Query: 61  FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120
            +NQEEYAR++SD+GEY+AV ELGRPDAEYWNSQKDLLE++R +VD YCR+NYGV ESFT
Sbjct: 60  IYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFT 119

Query: 121 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 180
           VQRRV P+VTVYP+KTQPLQHHNLLVCSV+GFYPGSIEVRWFRNGQEEKAGVVSTGLIQN
Sbjct: 120 VQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 179

Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 240
           GDWTFQTLVMLETVPRSGEVYTCQVEHPS+ SPLTV+WSARSESAQSKMLSGVGGFVLGL
Sbjct: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLSGVGGFVLGL 239

Query: 241 LFLGAGLFIYFRNQKGHSGLQPTGFLS 267
           LFLG GLFIYFRNQKGHSGLQPTG LS
Sbjct: 240 LFLGTGLFIYFRNQKGHSGLQPTGLLS 266


>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  436 bits (1122), Expect = e-123
 Identities = 210/230 (91%), Positives = 217/230 (94%)

Query: 38  LWLLKSECHFFNGTERVRFLERHFHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDL 97
           LW  K +CHFFNGTERV+FLER F+NQEE+ RFDSDVGEYRAV ELGRP AE WNSQKD+
Sbjct: 35  LWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDI 94

Query: 98  LEQKRGQVDNYCRHNYGVGESFTVQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSI 157
           LE +RGQVD  CRHNYGVGESFTVQRRVHP+VTVYPAKTQPLQHHNLLVCSVSGFYPGSI
Sbjct: 95  LEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSI 154

Query: 158 EVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVE 217
           EVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVE
Sbjct: 155 EVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVE 214

Query: 218 WSARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 267
           W ARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS
Sbjct: 215 WRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264


>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  436 bits (1122), Expect = e-123
 Identities = 210/230 (91%), Positives = 217/230 (94%)

Query: 38  LWLLKSECHFFNGTERVRFLERHFHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDL 97
           LW  K +CHFFNGTERV+FLER F+NQEE+ RFDSDVGEYRAV ELGRP AE WNSQKD+
Sbjct: 35  LWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDI 94

Query: 98  LEQKRGQVDNYCRHNYGVGESFTVQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSI 157
           LE +RGQVD  CRHNYGVGESFTVQRRVHP+VTVYPAKTQPLQHHNLLVCSVSGFYPGSI
Sbjct: 95  LEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSI 154

Query: 158 EVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVE 217
           EVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVE
Sbjct: 155 EVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVE 214

Query: 218 WSARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 267
           W ARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS
Sbjct: 215 WRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264


>gi|239758090 PREDICTED: major histocompatibility complex, class II,
           DR beta 4 [Homo sapiens]
          Length = 278

 Score =  413 bits (1062), Expect = e-116
 Identities = 197/226 (87%), Positives = 212/226 (93%)

Query: 42  KSECHFFNGTERVRFLERHFHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQK 101
           K ECHF NGTERV  L R+ +NQEEYAR++SD+GEY+AV ELGRPDAEYWNSQKDLLE++
Sbjct: 53  KCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERR 112

Query: 102 RGQVDNYCRHNYGVGESFTVQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRW 161
           R +VD YCR+NYGV ESFTVQRRV P+VTVYP+KTQPLQHHNLLVCSV+GFYPGSIEVRW
Sbjct: 113 RAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRW 172

Query: 162 FRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSAR 221
           FRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ SPLTV+WSAR
Sbjct: 173 FRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSAR 232

Query: 222 SESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 267
           SESAQSKMLSGVGGFVLGLLFLG GLFIYFRNQKGHSGLQPTG LS
Sbjct: 233 SESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278


>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain [Homo sapiens]
          Length = 253

 Score =  411 bits (1057), Expect = e-115
 Identities = 216/269 (80%), Positives = 227/269 (84%), Gaps = 18/269 (6%)

Query: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60
           MVCLKLPGGS +AALTVTLMVLSS LA AGDT+ +  LW  K +CHFFNGTERV+FLER 
Sbjct: 1   MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRF-LWQGKYKCHFFNGTERVQFLERL 59

Query: 61  FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120
           F+NQEE+ RFDSDVGEYRAV ELGRP AE    Q DLL          C     + +SF 
Sbjct: 60  FYNQEEFVRFDSDVGEYRAVTELGRPVAEQKTKQGDLL----------C-----LPDSFP 104

Query: 121 VQ--RRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLI 178
           +     VHP+VTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLI
Sbjct: 105 LPCFLLVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLI 164

Query: 179 QNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVL 238
           QNGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEW ARSESAQSKMLSGVGGFVL
Sbjct: 165 QNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVL 224

Query: 239 GLLFLGAGLFIYFRNQKGHSGLQPTGFLS 267
           GLLFLGAGLFIYFRNQKGHSGLQPTGFLS
Sbjct: 225 GLLFLGAGLFIYFRNQKGHSGLQPTGFLS 253


>gi|169217452 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-4 beta chain, partial [Homo sapiens]
          Length = 223

 Score =  336 bits (861), Expect = 1e-92
 Identities = 156/172 (90%), Positives = 165/172 (95%)

Query: 41  LKSECHFFNGTERVRFLERHFHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQ 100
           +K ECHFFNGTERVRFL+R+F++QEEY RFDSDVGEYRAV ELGRPDAEYWNSQKDLLEQ
Sbjct: 52  VKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQ 111

Query: 101 KRGQVDNYCRHNYGVGESFTVQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVR 160
           KR  VD YCRHNYGVGESFTVQRRV+P+VTVYPAKTQPLQHHNLLVCSV+GFYPGSIEVR
Sbjct: 112 KRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVR 171

Query: 161 WFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS 212
           WFRNGQEEK GVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+TS
Sbjct: 172 WFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223


>gi|150418002 major histocompatibility complex, class II, DQ beta 1
           precursor [Homo sapiens]
          Length = 261

 Score =  326 bits (836), Expect = 1e-89
 Identities = 161/253 (63%), Positives = 195/253 (77%), Gaps = 1/253 (0%)

Query: 4   LKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERHFHN 63
           L++PG   +A +T+ L +LSS LA   D+  +  ++  K  C+F NGTERVR + R+ +N
Sbjct: 7   LRIPGDLRVATVTLMLAMLSSLLAEGRDSP-EDFVFQFKGMCYFTNGTERVRLVTRYIYN 65

Query: 64  QEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTVQR 123
           +EEYARFDSDVG YRAV   GRPDAEYWNSQK++LE  R ++D  CRHNY V     +QR
Sbjct: 66  REEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQR 125

Query: 124 RVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDW 183
           RV P VT+ P++T+ L HHNLLVCSV+ FYPG I+VRWFRN QEE AGVVST LI+NGDW
Sbjct: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDW 185

Query: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFL 243
           TFQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEW A+SESAQSKMLSGVGGFVLGL+FL
Sbjct: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFL 245

Query: 244 GAGLFIYFRNQKG 256
           G GL I  R+QKG
Sbjct: 246 GLGLIIRQRSQKG 258


>gi|239758095 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  326 bits (836), Expect = 1e-89
 Identities = 159/253 (62%), Positives = 195/253 (77%), Gaps = 1/253 (0%)

Query: 4   LKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERHFHN 63
           L++PGG   A +T+ L +LS+ +A   D+  +  ++  K  C+F NGTERVR + R  +N
Sbjct: 7   LRIPGGLRAATVTLMLSMLSTPVAEGRDSP-EDFVYQFKGMCYFTNGTERVRLVSRSIYN 65

Query: 64  QEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTVQR 123
           +EE  RFDSDVGE+RAV  LG P AEYWNSQKD+LE+KR  VD  CRHNY +    T+QR
Sbjct: 66  REEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQR 125

Query: 124 RVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDW 183
           RV P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRNGQEE AGVVST LI+NGDW
Sbjct: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLIRNGDW 185

Query: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFL 243
           TFQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEW A+SESAQSKMLSG+GGFVLGL+FL
Sbjct: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFL 245

Query: 244 GAGLFIYFRNQKG 256
           G GL I+ R+QKG
Sbjct: 246 GLGLIIHHRSQKG 258


>gi|239740749 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  326 bits (836), Expect = 1e-89
 Identities = 159/253 (62%), Positives = 195/253 (77%), Gaps = 1/253 (0%)

Query: 4   LKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERHFHN 63
           L++PGG   A +T+ L +LS+ +A   D+  +  ++  K  C+F NGTERVR + R  +N
Sbjct: 7   LRIPGGLRAATVTLMLSMLSTPVAEGRDSP-EDFVYQFKGMCYFTNGTERVRLVSRSIYN 65

Query: 64  QEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTVQR 123
           +EE  RFDSDVGE+RAV  LG P AEYWNSQKD+LE+KR  VD  CRHNY +    T+QR
Sbjct: 66  REEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQR 125

Query: 124 RVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDW 183
           RV P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRNGQEE AGVVST LI+NGDW
Sbjct: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLIRNGDW 185

Query: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFL 243
           TFQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEW A+SESAQSKMLSG+GGFVLGL+FL
Sbjct: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFL 245

Query: 244 GAGLFIYFRNQKG 256
           G GL I+ R+QKG
Sbjct: 246 GLGLIIHHRSQKG 258


>gi|239748788 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 2 [Homo sapiens]
          Length = 281

 Score =  324 bits (831), Expect = 4e-89
 Identities = 158/253 (62%), Positives = 195/253 (77%), Gaps = 1/253 (0%)

Query: 4   LKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERHFHN 63
           L++PGG  +A +T+ L +LS+ +A   D+  +  ++  K  C+F NGTERVR + R  +N
Sbjct: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSP-EDFVYQFKGMCYFTNGTERVRLVSRSIYN 65

Query: 64  QEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTVQR 123
           +EE  RFDSDVGE+RAV  LG P AEYWNSQKD+LE+KR  VD  CRHNY +    T+QR
Sbjct: 66  REEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQR 125

Query: 124 RVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDW 183
           RV P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE AGVVST LI+NGDW
Sbjct: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDW 185

Query: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFL 243
           TFQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEW A+SESAQSKMLSG+GGFVLGL+FL
Sbjct: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFL 245

Query: 244 GAGLFIYFRNQKG 256
           G GL I+ R+QKG
Sbjct: 246 GLGLIIHHRSQKG 258


>gi|169168591 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 1 [Homo sapiens]
          Length = 261

 Score =  324 bits (830), Expect = 6e-89
 Identities = 158/253 (62%), Positives = 196/253 (77%), Gaps = 1/253 (0%)

Query: 4   LKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERHFHN 63
           L++PGG  +A +T+ L +LS+ +A   D+  +  ++  K  C+F NGTERVR + R+ +N
Sbjct: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSP-EDFVFQFKGMCYFTNGTERVRGVTRYIYN 65

Query: 64  QEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTVQR 123
           +EEYARFDSDVG YRAV  LG P AEYWNSQK++LE+ R  VD  CRHNY +    T+QR
Sbjct: 66  REEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRASVDTVCRHNYQLELRTTLQR 125

Query: 124 RVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDW 183
           RV P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE AGVVST LI+NGDW
Sbjct: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDW 185

Query: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFL 243
           TFQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEW A+SESAQSKMLSG+GGFVLGL+FL
Sbjct: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFL 245

Query: 244 GAGLFIYFRNQKG 256
           G GL I+ R+QKG
Sbjct: 246 GLGLIIHHRSQKG 258


>gi|239740863 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  323 bits (829), Expect = 7e-89
 Identities = 158/253 (62%), Positives = 194/253 (76%), Gaps = 1/253 (0%)

Query: 4   LKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERHFHN 63
           L++PGG   A +T+ L +LS+ +A   D+  +  ++  K  C+F NGTERVR + R  +N
Sbjct: 7   LRIPGGLRAATVTLMLSMLSTPVAEGRDSP-EDFVYQFKGMCYFTNGTERVRLVSRSIYN 65

Query: 64  QEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTVQR 123
           +EE  RFDSDVGE+RAV  LG P AEYWNSQKD+LE+KR  VD  CRHNY +    T+QR
Sbjct: 66  REEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQR 125

Query: 124 RVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDW 183
           RV P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE AGVVST LI+NGDW
Sbjct: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDW 185

Query: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFL 243
           TFQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEW A+SESAQSKMLSG+GGFVLGL+FL
Sbjct: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFL 245

Query: 244 GAGLFIYFRNQKG 256
           G GL I+ R+QKG
Sbjct: 246 GLGLIIHHRSQKG 258


>gi|239513955 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  323 bits (829), Expect = 7e-89
 Identities = 158/253 (62%), Positives = 194/253 (76%), Gaps = 1/253 (0%)

Query: 4   LKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERHFHN 63
           L++PGG   A +T+ L +LS+ +A   D+  +  ++  K  C+F NGTERVR + R  +N
Sbjct: 7   LRIPGGLRAATVTLMLSMLSTPVAEGRDSP-EDFVYQFKGMCYFTNGTERVRLVSRSIYN 65

Query: 64  QEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTVQR 123
           +EE  RFDSDVGE+RAV  LG P AEYWNSQKD+LE+KR  VD  CRHNY +    T+QR
Sbjct: 66  REEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQR 125

Query: 124 RVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDW 183
           RV P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE AGVVST LI+NGDW
Sbjct: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDW 185

Query: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFL 243
           TFQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEW A+SESAQSKMLSG+GGFVLGL+FL
Sbjct: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFL 245

Query: 244 GAGLFIYFRNQKG 256
           G GL I+ R+QKG
Sbjct: 246 GLGLIIHHRSQKG 258


>gi|239740920 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 2 [Homo sapiens]
          Length = 261

 Score =  319 bits (817), Expect = 2e-87
 Identities = 154/253 (60%), Positives = 195/253 (77%), Gaps = 1/253 (0%)

Query: 4   LKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERHFHN 63
           L++PGG  +A +T+ L +LS+ +A   D+  +  ++  K  C+F NGTERVR + R+ +N
Sbjct: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSP-EDFVYQFKGMCYFTNGTERVRGVTRYIYN 65

Query: 64  QEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTVQR 123
           +EEYARFDSDVG YRAV  LG P AEYWNSQK++LE+ R ++D  CRHNY +    T+QR
Sbjct: 66  REEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQR 125

Query: 124 RVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDW 183
           RV P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE  GVVST LI+NGDW
Sbjct: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDW 185

Query: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFL 243
           TFQ LVMLE  P+ G+VYTC VEHPS+ +P+ VEW A+SESAQSKMLSG+GGFVLGL+FL
Sbjct: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFL 245

Query: 244 GAGLFIYFRNQKG 256
           G GL I+ R+QKG
Sbjct: 246 GLGLIIHHRSQKG 258


>gi|239740918 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 1 [Homo sapiens]
          Length = 281

 Score =  319 bits (817), Expect = 2e-87
 Identities = 154/253 (60%), Positives = 195/253 (77%), Gaps = 1/253 (0%)

Query: 4   LKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERHFHN 63
           L++PGG  +A +T+ L +LS+ +A   D+  +  ++  K  C+F NGTERVR + R+ +N
Sbjct: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSP-EDFVYQFKGMCYFTNGTERVRGVTRYIYN 65

Query: 64  QEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTVQR 123
           +EEYARFDSDVG YRAV  LG P AEYWNSQK++LE+ R ++D  CRHNY +    T+QR
Sbjct: 66  REEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQR 125

Query: 124 RVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDW 183
           RV P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE  GVVST LI+NGDW
Sbjct: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDW 185

Query: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFL 243
           TFQ LVMLE  P+ G+VYTC VEHPS+ +P+ VEW A+SESAQSKMLSG+GGFVLGL+FL
Sbjct: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFL 245

Query: 244 GAGLFIYFRNQKG 256
           G GL I+ R+QKG
Sbjct: 246 GLGLIIHHRSQKG 258


>gi|24797076 major histocompatibility complex, class II, DP beta 1
           precursor [Homo sapiens]
          Length = 258

 Score =  316 bits (810), Expect = 1e-86
 Identities = 156/259 (60%), Positives = 195/259 (75%), Gaps = 3/259 (1%)

Query: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60
           M+ L++       ALT  LMVL + +   G    ++ L+  + EC+ FNGT+R  FLER+
Sbjct: 1   MMVLQVSAAPRTVALTALLMVLLTSVV-QGRATPENYLFQGRQECYAFNGTQR--FLERY 57

Query: 61  FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120
            +N+EE+ARFDSDVGE+RAV ELGRP AEYWNSQKD+LE+KR   D  CRHNY +G   T
Sbjct: 58  IYNREEFARFDSDVGEFRAVTELGRPAAEYWNSQKDILEEKRAVPDRMCRHNYELGGPMT 117

Query: 121 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 180
           +QRRV P+V V P+K  PLQHHNLLVC V+ FYPGSI+VRWF NGQEE AGVVST LI+N
Sbjct: 118 LQRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIRN 177

Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 240
           GDWTFQ LVMLE  P+ G+VYTCQVEH S+ SP+TVEW A+S+SA+SK L+G GGFVLGL
Sbjct: 178 GDWTFQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQSDSARSKTLTGAGGFVLGL 237

Query: 241 LFLGAGLFIYFRNQKGHSG 259
           +  G G+F++ R++K   G
Sbjct: 238 IICGVGIFMHRRSKKVQRG 256


>gi|4504403 major histocompatibility complex, class II, DO beta
           precursor [Homo sapiens]
          Length = 273

 Score =  282 bits (721), Expect = 2e-76
 Identities = 139/253 (54%), Positives = 179/253 (70%), Gaps = 1/253 (0%)

Query: 12  LAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERHFHNQEEYARFD 71
           + AL V L  L S +    D+     +   K++C+F NGTE+V+F+ R   N EEY RFD
Sbjct: 9   VVALLVNLTRLDSSMTQGTDSPEDFVIQA-KADCYFTNGTEKVQFVVRFIFNLEEYVRFD 67

Query: 72  SDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTVQRRVHPQVTV 131
           SDVG + A+ +LG+PDAE WNS+ DLLE+ R  VD  CRHNY +G  FTV R+V P+VTV
Sbjct: 68  SDVGMFVALTKLGQPDAEQWNSRLDLLERSRQAVDGVCRHNYRLGAPFTVGRKVQPEVTV 127

Query: 132 YPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVML 191
           YP +T  L  HNLL CSV+GFYPG I+++WF NGQEE+AGV+STG I+NGDWTFQT+VML
Sbjct: 128 YPERTPLLHQHNLLHCSVTGFYPGDIKIKWFLNGQEERAGVMSTGPIRNGDWTFQTVVML 187

Query: 192 ETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFLGAGLFIYF 251
           E  P  G VYTC V+H S+ SP++VEW A+SE +  KMLSG+  F+LGL+FL  G+ I  
Sbjct: 188 EMTPELGHVYTCLVDHSSLLSPVSVEWRAQSEYSWRKMLSGIAAFLLGLIFLLVGIVIQL 247

Query: 252 RNQKGHSGLQPTG 264
           R QKG+   Q +G
Sbjct: 248 RAQKGYVRTQMSG 260


>gi|169168671 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 241

 Score =  263 bits (671), Expect = 2e-70
 Identities = 126/140 (90%), Positives = 132/140 (94%)

Query: 125 VHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 184
           + P+ T+YPAKT+PL H N LVCSVSGFYPGSIEVRWF+NGQEEKA VVS GLIQNGDWT
Sbjct: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158

Query: 185 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFLG 244
           FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSAR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218

Query: 245 AGLFIYFRNQKGHSGLQPTG 264
            GLFIYFRNQKGHSGLQPTG
Sbjct: 219 TGLFIYFRNQKGHSGLQPTG 238


>gi|169168589 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 140

 Score =  181 bits (458), Expect = 8e-46
 Identities = 91/124 (73%), Positives = 104/124 (83%), Gaps = 1/124 (0%)

Query: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60
           MVCLKLPGGS +AALTVTL VLSS LA AGDT+ +  L   K ECHF NGTERV  L R+
Sbjct: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRF-LEQAKCECHFLNGTERVWNLIRY 59

Query: 61  FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120
            +NQEEYAR++SD+GEY+AV ELGRPDAEYWNSQKDLLE++R +VD YCR+NYGV ESFT
Sbjct: 60  IYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFT 119

Query: 121 VQRR 124
           VQRR
Sbjct: 120 VQRR 123


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,592,848
Number of Sequences: 37866
Number of extensions: 455075
Number of successful extensions: 1237
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1070
Number of HSP's gapped (non-prelim): 177
length of query: 267
length of database: 18,247,518
effective HSP length: 100
effective length of query: 167
effective length of database: 14,460,918
effective search space: 2414973306
effective search space used: 2414973306
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.