Guide to the Human Genome
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Name: TMEM25 Sequence: fasta or formatted (322aa) NCBI GI: 221139830
Description:

transmembrane protein 25 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {218aa} transmembrane protein 25 isoform 3
alt prot {351aa} transmembrane protein 25 isoform 4
alt prot {306aa} transmembrane protein 25 isoform 5
alt mRNA {322aa} transmembrane protein 25 isoform 2
alt prot {366aa} transmembrane protein 25 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         29           2
 C cysteine            0.6          2           1
 D aspartate           4.3         14           1
 E glutamate           4.3         14           1
 F phenylalanine       2.2          7           1
 G glycine             7.1         23           2
 H histidine           2.2          7           1
 I isoleucine          2.5          8           1
 K lysine              1.2          4           1
 L leucine            14.0         45           4
 M methionine          0.9          3           1
 N asparagine          6.2         20           2
 P proline             8.1         26           2
 Q glutamine           5.6         18           1
 R arginine            6.2         20           1
 S serine              9.3         30           2
 T threonine           5.6         18           1
 V valine              7.1         23           2
 W tryptophan          1.9          6           1
 Y tyrosine            1.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 25 isoform 2 
TMEM25                1.000   transmembrane protein 25 isoform 2 
TMEM25                0.966   transmembrane protein 25 isoform 1 
TMEM25                0.918   transmembrane protein 25 isoform 5 
TMEM25                0.894   transmembrane protein 25 isoform 4 
TMEM25                0.585   transmembrane protein 25 isoform 3 
HMCN1                 0.035   hemicentin 1 
TTN                   0.027   titin isoform N2-A 
SIGLEC1               0.026   sialoadhesin precursor 
NPHS1                 0.024   nephrin precursor 
KIRREL2               0.024   kin of IRRE-like 2 isoform c 
KIRREL2               0.024   kin of IRRE-like 2 isoform b 
KIRREL2               0.024   kin of IRRE-like 2 isoform a 
CEACAM1               0.023   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.023   carcinoembryonic antigen-related cell adhesion molec...
KIRREL                0.023   kin of IRRE like 
LOC147645             0.019   PREDICTED: hypothetical protein 
LOC147645             0.019   PREDICTED: hypothetical protein 
LOC147645             0.019   PREDICTED: hypothetical protein 
HMCN2                 0.019   PREDICTED: hemicentin 2 
HMCN2                 0.019   PREDICTED: hemicentin 2 
HMCN2                 0.019   PREDICTED: hemicentin 2 
CEACAM5               0.018   carcinoembryonic antigen-related cell adhesion molec...
NTRK3                 0.016   neurotrophic tyrosine kinase, receptor, type 3 isofo...
NTRK3                 0.016   neurotrophic tyrosine kinase, receptor, type 3 isofo...
NTRK3                 0.016   neurotrophic tyrosine kinase, receptor, type 3 isofo...
LOC651845             0.013   PREDICTED: similar to MHC class II antigen 
LRIG1                 0.013   leucine-rich repeats and immunoglobulin-like domains...
SPEG                  0.013   SPEG complex locus 
AGER                  0.013   advanced glycosylation end product-specific receptor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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