Guide to the Human Genome
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Name: OTUD5 Sequence: fasta or formatted (566aa) NCBI GI: 209977021
Description:

OTU domain containing 5 isoform b

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt mRNA [566aa] OTU domain containing 5 isoform b
alt prot [349aa] OTU domain containing 5 isoform c
alt prot [571aa] OTU domain containing 5 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         62           4
 C cysteine            1.6          9           2
 D aspartate           4.9         28           3
 E glutamate           6.9         39           2
 F phenylalanine       1.8         10           1
 G glycine            11.1         63           4
 H histidine           2.5         14           1
 I isoleucine          2.8         16           2
 K lysine              4.8         27           3
 L leucine             4.8         27           1
 M methionine          2.7         15           1
 N asparagine          3.4         19           2
 P proline            10.6         60           4
 Q glutamine           4.8         27           2
 R arginine            5.8         33           3
 S serine              7.2         41           2
 T threonine           3.2         18           2
 V valine              6.4         36           3
 W tryptophan          1.2          7           1
 Y tyrosine            2.7         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   OTU domain containing 5 isoform b 
OTUD5                 1.000   OTU domain containing 5 isoform b 
OTUD5                 0.995   OTU domain containing 5 isoform a 
OTUD5                 0.601   OTU domain containing 5 isoform c 
OTUD1                 0.038   OTU domain containing 1 
COL1A1                0.037   alpha 1 type I collagen preproprotein 
SFPQ                  0.031   splicing factor proline/glutamine rich (polypyrimidin...
COL3A1                0.030   collagen type III alpha 1 preproprotein 
LBXCOR1               0.030   LBXCOR1 homolog 
ELN                   0.030   elastin isoform e precursor 
ELN                   0.030   elastin isoform d precursor 
ELN                   0.030   elastin isoform c precursor 
ELN                   0.030   elastin isoform b precursor 
ELN                   0.030   elastin isoform a precursor 
C6orf174              0.030   hypothetical protein LOC387104 
OTUD3                 0.030   OTU domain containing 3 
DIAPH1                0.029   diaphanous 1 isoform 2 
DIAPH1                0.029   diaphanous 1 isoform 1 
COL5A1                0.029   alpha 1 type V collagen preproprotein 
COL8A2                0.029   collagen, type VIII, alpha 2 
COL2A1                0.028   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.028   collagen, type II, alpha 1 isoform 2 precursor [Hom...
PPP1R10               0.028   protein phosphatase 1, regulatory subunit 10 
COL1A2                0.027   alpha 2 type I collagen 
COL4A4                0.027   alpha 4 type IV collagen precursor 
PRB2                  0.027   proline-rich protein BstNI subfamily 2 
SAMD1                 0.027   sterile alpha motif domain containing 1 
COL9A1                0.026   alpha 1 type IX collagen isoform 1 precursor 
COL9A1                0.026   alpha 1 type IX collagen isoform 2 precursor 
PRB1                  0.026   proline-rich protein BstNI subfamily 1 isoform 1 pre...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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