Guide to the Human Genome
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Name: GAD2 Sequence: fasta or formatted (585aa) NCBI GI: 197276620
Description:

glutamate decarboxylase 2

Referenced in:

GABA and Glycine
Glutamate

Other entries for this name:
alt mRNA [585aa] glutamate decarboxylase 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         51           3
 C cysteine            2.6         15           1
 D aspartate           5.5         32           1
 E glutamate           5.8         34           2
 F phenylalanine       4.4         26           2
 G glycine             7.9         46           3
 H histidine           2.6         15           1
 I isoleucine          4.6         27           2
 K lysine              6.5         38           2
 L leucine             9.4         55           2
 M methionine          4.3         25           2
 N asparagine          3.6         21           1
 P proline             4.6         27           2
 Q glutamine           3.8         22           2
 R arginine            4.1         24           2
 S serine              5.8         34           1
 T threonine           4.8         28           2
 V valine              5.5         32           2
 W tryptophan          2.1         12           1
 Y tyrosine            3.6         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glutamate decarboxylase 2 
GAD2                  1.000   glutamate decarboxylase 2 
GAD1                  0.641   glutamate decarboxylase 1 isoform GAD67 
CSAD                  0.426   cysteine sulfinic acid decarboxylase 
GADL1                 0.410   glutamate decarboxylase-like 1 
GAD1                  0.124   glutamate decarboxylase 1 isoform GAD25 
DDC                   0.096   dopa decarboxylase (aromatic L-amino acid decarboxy...
DDC                   0.096   dopa decarboxylase (aromatic L-amino acid decarboxyla...
HDC                   0.083   histidine decarboxylase 
PDXDC1                0.019   pyridoxal-dependent decarboxylase domain containing...
SGPL1                 0.013   sphingosine-1-phosphate lyase 1 
ALDH6A1               0.007   aldehyde dehydrogenase 6A1 precursor 
CACNA1H               0.007   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1H               0.007   calcium channel, voltage-dependent, T type, alpha 1H...
SH3YL1                0.006   SH3 domain containing, Ysc84-like 1 isoform 2 [Homo...
LOC642612             0.004   PREDICTED: similar to tripartite motif protein 39 [...
LOC653192             0.004   PREDICTED: Tripartite motif-containing protein 43-li...
ALPK2                 0.004   heart alpha-kinase 
WDR88                 0.004   PQQ repeat and WD repeat domain containing 
TRIM43                0.004   tripartite motif-containing 43 
CENPH                 0.004   centromere protein H 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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