Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PDXDC1 Sequence: fasta or formatted (788aa) NCBI GI: 190341074
Description:

pyridoxal-dependent decarboxylase domain containing 1

Referenced in:

Additional Enzymes and Related Sequences

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         55           3
 C cysteine            2.0         16           2
 D aspartate           4.9         39           2
 E glutamate           8.9         70           3
 F phenylalanine       2.4         19           2
 G glycine             7.6         60           1
 H histidine           2.3         18           1
 I isoleucine          3.8         30           1
 K lysine              5.6         44           2
 L leucine            12.8        101           3
 M methionine          1.9         15           1
 N asparagine          3.0         24           1
 P proline             5.7         45           2
 Q glutamine           4.7         37           1
 R arginine            4.8         38           2
 S serine              7.2         57           3
 T threonine           4.9         39           2
 V valine              7.1         56           3
 W tryptophan          0.9          7           1
 Y tyrosine            2.3         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pyridoxal-dependent decarboxylase domain containing... 
GADL1                 0.022   glutamate decarboxylase-like 1 
CSAD                  0.019   cysteine sulfinic acid decarboxylase 
HDC                   0.017   histidine decarboxylase 
GAD1                  0.014   glutamate decarboxylase 1 isoform GAD67 
GAD2                  0.014   glutamate decarboxylase 2 
GAD2                  0.014   glutamate decarboxylase 2 
DDC                   0.013   dopa decarboxylase (aromatic L-amino acid decarboxy...
DDC                   0.013   dopa decarboxylase (aromatic L-amino acid decarboxyla...
KIF3A                 0.008   kinesin family member 3A 
MGA                   0.007   MAX gene associated 
SPIRE1                0.006   spire homolog 1 isoform b 
SPIRE1                0.006   spire homolog 1 isoform c 
PHLDB2                0.006   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.006   pleckstrin homology-like domain, family B, member 2...
SPIRE1                0.006   spire homolog 1 isoform a 
TNIP1                 0.006   TNFAIP3 interacting protein 1 
PODXL                 0.005   podocalyxin-like isoform 2 precursor 
KIAA0319L             0.005   dyslexia susceptibility 2-like 
KIF20B                0.005   M-phase phosphoprotein 1 
RRBP1                 0.005   ribosome binding protein 1 
RRBP1                 0.005   ribosome binding protein 1 
ACAN                  0.005   aggrecan isoform 2 precursor 
ACAN                  0.005   aggrecan isoform 1 precursor 
TTC6                  0.005   PREDICTED: tetratricopeptide repeat domain 6 
TTC6                  0.005   PREDICTED: tetratricopeptide repeat domain 6 
C14orf25              0.005   PREDICTED: chromosome 14 open reading frame 25 [Hom...
SCRN1                 0.005   secernin 1 isoform a 
SCRN1                 0.005   secernin 1 isoform c 
SCRN1                 0.005   secernin 1 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press