Search of human proteins with 14042970

Search of human proteins with 14042970

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14042970 integrin alpha FG-GAP repeat containing 3 [Homo
sapiens]
         (552 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14042970 integrin alpha FG-GAP repeat containing 3 [Homo sapi...  1112   0.0  
gi|62821776 hypothetical protein LOC57613 [Homo sapiens]              184   1e-46
gi|34452173 integrin alpha X precursor [Homo sapiens]                  33   0.89 
gi|28559039 mediator complex subunit 1 [Homo sapiens]                  30   4.4  
gi|94680985 cyclin J-like [Homo sapiens]                               30   5.8  
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        30   5.8  
gi|47419930 chondroitin sulfate proteoglycan 4 [Homo sapiens]          29   9.8  
gi|105990514 filamin B, beta (actin binding protein 278) [Homo s...    29   9.8  

>gi|14042970 integrin alpha FG-GAP repeat containing 3 [Homo
           sapiens]
          Length = 552

 Score = 1112 bits (2875), Expect = 0.0
 Identities = 552/552 (100%), Positives = 552/552 (100%)

Query: 1   MLDHKDLEAEIHPLKNEERKSQENLGNPSKNEDNVKSAPPQSRLSRCRAAAFFLSLFLCL 60
           MLDHKDLEAEIHPLKNEERKSQENLGNPSKNEDNVKSAPPQSRLSRCRAAAFFLSLFLCL
Sbjct: 1   MLDHKDLEAEIHPLKNEERKSQENLGNPSKNEDNVKSAPPQSRLSRCRAAAFFLSLFLCL 60

Query: 61  FVVFVVSFVIPCPDRPASQRMWRIDYSAAVIYDFLAVDDINGDRIQDVLFLYKNTNSSNN 120
           FVVFVVSFVIPCPDRPASQRMWRIDYSAAVIYDFLAVDDINGDRIQDVLFLYKNTNSSNN
Sbjct: 61  FVVFVVSFVIPCPDRPASQRMWRIDYSAAVIYDFLAVDDINGDRIQDVLFLYKNTNSSNN 120

Query: 121 FSRSCVDEGFSSPCTFAAAVSGANGSTLWERPVAQDVALVECAVPQPRGSEAPSACILVG 180
           FSRSCVDEGFSSPCTFAAAVSGANGSTLWERPVAQDVALVECAVPQPRGSEAPSACILVG
Sbjct: 121 FSRSCVDEGFSSPCTFAAAVSGANGSTLWERPVAQDVALVECAVPQPRGSEAPSACILVG 180

Query: 181 RPSSFIAVNLFTGETLWNHSSSFSGNASILSPLLQVPDVDGDGAPDLLVLTQEREEVSGH 240
           RPSSFIAVNLFTGETLWNHSSSFSGNASILSPLLQVPDVDGDGAPDLLVLTQEREEVSGH
Sbjct: 181 RPSSFIAVNLFTGETLWNHSSSFSGNASILSPLLQVPDVDGDGAPDLLVLTQEREEVSGH 240

Query: 241 LYSGSTGHQIGLRGSLGVDGESGFLLHVTRTGAHYILFPCASSLCGCSVKGLYEKVTGSG 300
           LYSGSTGHQIGLRGSLGVDGESGFLLHVTRTGAHYILFPCASSLCGCSVKGLYEKVTGSG
Sbjct: 241 LYSGSTGHQIGLRGSLGVDGESGFLLHVTRTGAHYILFPCASSLCGCSVKGLYEKVTGSG 300

Query: 301 GPFKSDPHWESMLNATTRRMLSHSSGAVRYLMHVPGNAGADVLLVGSEAFVLLDGQELTP 360
           GPFKSDPHWESMLNATTRRMLSHSSGAVRYLMHVPGNAGADVLLVGSEAFVLLDGQELTP
Sbjct: 301 GPFKSDPHWESMLNATTRRMLSHSSGAVRYLMHVPGNAGADVLLVGSEAFVLLDGQELTP 360

Query: 361 RWTPKAAHVLRKPIFGRYKPDTLAVAVENGTGTDRQILFLDLGTGAVLCSLALPSLPGGP 420
           RWTPKAAHVLRKPIFGRYKPDTLAVAVENGTGTDRQILFLDLGTGAVLCSLALPSLPGGP
Sbjct: 361 RWTPKAAHVLRKPIFGRYKPDTLAVAVENGTGTDRQILFLDLGTGAVLCSLALPSLPGGP 420

Query: 421 LSASLPTADHRSAFFFWGLHELGSTSETETGEARHSLYMFHPTLPRVLLELANVSTHIVA 480
           LSASLPTADHRSAFFFWGLHELGSTSETETGEARHSLYMFHPTLPRVLLELANVSTHIVA
Sbjct: 421 LSASLPTADHRSAFFFWGLHELGSTSETETGEARHSLYMFHPTLPRVLLELANVSTHIVA 480

Query: 481 FDAVLFEPSRHAAYILLTGPADSEAPGLVSVIKHKVRDLVPSSRVVRLGEGGPDSDQAIR 540
           FDAVLFEPSRHAAYILLTGPADSEAPGLVSVIKHKVRDLVPSSRVVRLGEGGPDSDQAIR
Sbjct: 481 FDAVLFEPSRHAAYILLTGPADSEAPGLVSVIKHKVRDLVPSSRVVRLGEGGPDSDQAIR 540

Query: 541 DRFSRLRYQSEA 552
           DRFSRLRYQSEA
Sbjct: 541 DRFSRLRYQSEA 552


>gi|62821776 hypothetical protein LOC57613 [Homo sapiens]
          Length = 622

 Score =  184 bits (468), Expect = 1e-46
 Identities = 146/565 (25%), Positives = 261/565 (46%), Gaps = 32/565 (5%)

Query: 6   DLEAEIHPLKNEERKSQENLGNPSKNEDNVKSAPPQSRLSRCRAAAFFLSLFLCLFVVFV 65
           D +AE+              G PS+    ++     S +S  R + F L+L + + +V +
Sbjct: 61  DSDAEVAEAAKPHLSEVTTEGYPSEPLGGLEQKAASSLVSYVRTSVFLLTLGISMILVLL 120

Query: 66  VSFVIPCPDRPASQRMWR-IDYSAAVIYDFLAVDDINGDRIQDVLFLYKNTNSSNNFSRS 124
            +F+IPCP R       R +          L + D+NGD ++DVL  +         SR+
Sbjct: 121 CAFLIPCPPRDLHSTWSRHLGSQGGGDLSPLELADVNGDGLRDVLLSFV-------MSRN 173

Query: 125 CVDEGFSSPCTFAAAVSGANGSTLWERPVAQDVALVECAVPQPRGSEAPSACILVGRPSS 184
               G S P      +SG NGSTLW   + ++   + C    P GS A + C++ G    
Sbjct: 174 GSAVGVSRPAANLVCLSGMNGSTLWSSLLPEEARDITCLELMP-GSLAETICLVTGTHKM 232

Query: 185 FIAVNLFTGETLWNHSSSFSGNASILSPLLQVPDVDGDGAPDLLVLT--QEREEVSGHLY 242
             A N  +G+ +W  + ++  N ++ +P++ +PD+D DG  DL+VL   + + ++   L 
Sbjct: 233 LSAFNATSGKAIWTLNPNYLSNGTLAAPVVVLPDLDEDGVRDLVVLAIGELQPDLCFLLV 292

Query: 243 SGSTGHQIG---LRGSLGVDGESGFLLHVTRTGAHYILFPCASSLCGCSVKGLYEKVTGS 299
           SG TG+ +G       +GV    G  +++T  GA YILF    ++   +++ ++ +    
Sbjct: 293 SGRTGNPVGRPVKYNIVGVGNLIGPQVYITTNGAVYILFG-FGNIQAVALRDIFVQAQNR 351

Query: 300 GGPFKS----DPHWESMLNATTRRMLSHSSGAVRYLMHV--PGNAGADVLLVGSEAFVLL 353
                S    +P WE   +     ++   S  V  L  V  P +  +++L+   ++ VLL
Sbjct: 352 DSSPPSLQIEEPEWEKRRSINLSELIDVYSDGVELLQMVKAPDSNCSNLLITTRQSLVLL 411

Query: 354 DGQELTPRWTPKAAHVLRKPIFGRYKPD---TLAVAVENGTGTDRQILFLDLGTGAVLCS 410
            GQ LTP W  +   +  +P  G +  D      + +++G G  ++++ +D  +G+++ S
Sbjct: 412 RGQNLTPYWALRLQGLRSQPTPGYFTDDQTLDFLLQIQDGVGM-KKMMVVDGDSGSIVWS 470

Query: 411 LALPSLPGGPLSASLPTADHRSAFFFW--GLHELGSTSETETG---EARHSLYMFHPTLP 465
              P       + S  T+D +S F FW  GL      S+   G    + H LY+ HP  P
Sbjct: 471 YRAPCHMKETPATSAVTSDQKSVFLFWAEGLSAASPNSDIILGTEPPSLHHLYLLHPAFP 530

Query: 466 RVLLELANVSTHIVAFDAVLFEPSRHAAYIL-LTGPADSEAPGLVSVIKHKVRDLVPSSR 524
            +LL+LAN +  + A +  + +  + A Y+   TGP+    P  + V K  +R  +   +
Sbjct: 531 SILLDLANTTGTVTASEVGINDLWKDAFYVTRTTGPSSEGHPAALVVSKLSLRWALMEGQ 590

Query: 525 VVRLGEGGPDSDQAIRDRF-SRLRY 548
           + +L E  P   +    RF SR+++
Sbjct: 591 MAQLQESTPKIGRGELRRFLSRIKF 615


>gi|34452173 integrin alpha X precursor [Homo sapiens]
          Length = 1163

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 10/77 (12%)

Query: 75  RPASQRMWRIDYSAAVIYDFLAVDDINGDRIQDVLFLYKNTN--SSNNFSRSCVDEGFSS 132
           +P+ + +++++       DF A+ DI  +++++ +F  + T   SS++F      EGFS+
Sbjct: 307 KPSQEHIFKVE-------DFDALKDIQ-NQLKEKIFAIEGTETTSSSSFELEMAQEGFSA 358

Query: 133 PCTFAAAVSGANGSTLW 149
             T    V GA GS  W
Sbjct: 359 VFTPDGPVLGAVGSFTW 375


>gi|28559039 mediator complex subunit 1 [Homo sapiens]
          Length = 1581

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 40/167 (23%), Positives = 59/167 (35%), Gaps = 20/167 (11%)

Query: 180  GRPSSFIAVNLFTGETLWNHSSSFSGNASILSPLLQVPDVDGDGAPDLLVLTQEREEVSG 239
            G+PSS +  +L       +HS    G+  + SP+  VP     G P            SG
Sbjct: 1176 GKPSSLMNPSLSKPNISPSHSRPPGGSDKLASPMKPVP-----GTPPSSKAKSPISSGSG 1230

Query: 240  HLYSGSTGHQIGLRGSLGVDGESGFLLHVTRTGAHYILFPCASSLCGCSVKGLYEKVTGS 299
              +   T    G++ S G+ G SG L   T         P +S+ C  S        +GS
Sbjct: 1231 GSHMSGTSSSSGMKSSSGL-GSSGSLSQKT---------PPSSNSCTASSSSF--SSSGS 1278

Query: 300  GGPFKSDPHWESMLNATTRRMLSHSSGAVRYLMH---VPGNAGADVL 343
                  + H  S   + +R      +  +  L H     G  G D L
Sbjct: 1279 SMSSSQNQHGSSKGKSPSRNKKPSLTAVIDKLKHGVVTSGPGGEDPL 1325


>gi|94680985 cyclin J-like [Homo sapiens]
          Length = 435

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 307 PHWESMLNATTRRMLSHSSGAVRYLMHVPGNAGADVLLVGSEAFVLLDGQELTPR---WT 363
           P+W   L   +   L H S  +  L+ V  N   D + V S+A  ++ G   TP    + 
Sbjct: 270 PYWTRDLQRISSYSLEHLSTCIEILLVVYDNVLKDAVAVKSQALAMVPGTPPTPTQVLFQ 329

Query: 364 PKAAHVLRKP 373
           P A   L +P
Sbjct: 330 PPAYPALGQP 339


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 7/95 (7%)

Query: 114  NTNSSNNFSRSCVDEGFSSPCTFAAAVSGANGSTLWERPVAQDVALVECAVPQPRGSEAP 173
            +++SS++ S S      SS  +  ++ S + GS+L   PV  +VAL     P P    AP
Sbjct: 2534 SSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSL---PVQPEVALKRVPSPTP----AP 2586

Query: 174  SACILVGRPSSFIAVNLFTGETLWNHSSSFSGNAS 208
               +  GRP            +  + SSS S ++S
Sbjct: 2587 KEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSS 2621


>gi|47419930 chondroitin sulfate proteoglycan 4 [Homo sapiens]
          Length = 2322

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 48/173 (27%), Positives = 70/173 (40%), Gaps = 20/173 (11%)

Query: 125 CVDEGFSSPCTFAAAVSGANGSTLWERPVAQDVALVECAVPQPRGSEAPSACILVGRPSS 184
           C +E FS+    A   SG +    +     QD   +E  +   +  +AP A    GR   
Sbjct: 192 CAEE-FSASDDVALGFSGPHSLAAFPAWGTQDEGTLEFTLTT-QSRQAPLAFQAGGRRGD 249

Query: 185 FIAVNLFTGETLWNHSSSFSGNASILSPLLQVPDVDGDGAPDLLVLTQEREEVSGHLYSG 244
           FI V++F G      +    G  ++L     VP  DG      + +   R E+S   Y  
Sbjct: 250 FIYVDIFEGHL---RAVVEKGQGTVLLH-NSVPVADGQPHEVSVHINAHRLEISVDQYPT 305

Query: 245 STGHQ-----IGLRGSL---GVDGESGFLLHVTRTGAHYILFPCA--SSLCGC 287
            T ++     +  RGSL   G+D E+   L   R G    L P A  +SL GC
Sbjct: 306 HTSNRGVLSYLEPRGSLLLGGLDAEASRHLQEHRLG----LTPEATNASLLGC 354


>gi|105990514 filamin B, beta (actin binding protein 278) [Homo
            sapiens]
          Length = 2602

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 465  PRVLLELANVSTHIVAFDAVLFEPSRHAAYILLTGPADSEAPGLVSVIKHKVRDLVPSSR 524
            PR L+E  NV  +      V + PS+   Y++    AD E P   S  K KV     +S+
Sbjct: 1462 PRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYADEEIPR--SPFKVKVLPTYDASK 1519

Query: 525  VVRLGEG 531
            V   G G
Sbjct: 1520 VTASGPG 1526


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,259,497
Number of Sequences: 37866
Number of extensions: 1143918
Number of successful extensions: 2486
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2469
Number of HSP's gapped (non-prelim): 11
length of query: 552
length of database: 18,247,518
effective HSP length: 107
effective length of query: 445
effective length of database: 14,195,856
effective search space: 6317155920
effective search space used: 6317155920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.