Guide to the Human Genome
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Name: ITFG3 Sequence: fasta or formatted (552aa) NCBI GI: 14042970
Description:

integrin alpha FG-GAP repeat containing 3

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         47           3
 C cysteine            2.0         11           1
 D aspartate           5.4         30           2
 E glutamate           5.3         29           2
 F phenylalanine       4.9         27           3
 G glycine             8.2         45           2
 H histidine           3.3         18           1
 I isoleucine          3.1         17           1
 K lysine              2.5         14           1
 L leucine            11.6         64           2
 M methionine          1.1          6           1
 N asparagine          3.3         18           2
 P proline             6.3         35           2
 Q glutamine           2.4         13           1
 R arginine            6.0         33           2
 S serine             10.7         59           3
 T threonine           4.5         25           2
 V valine              8.0         44           2
 W tryptophan          1.1          6           1
 Y tyrosine            2.0         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   integrin alpha FG-GAP repeat containing 3 
KIAA1467              0.146   hypothetical protein LOC57613 
ITGAX                 0.007   integrin alpha X precursor 
MED1                  0.005   mediator complex subunit 1 
CCNJL                 0.005   cyclin J-like 
SRRM2                 0.005   splicing coactivator subunit SRm300 
CSPG4                 0.004   chondroitin sulfate proteoglycan 4 
FLNB                  0.004   filamin B, beta (actin binding protein 278) 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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