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Search of human proteins with 182765442
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|182765442 homeobox A10 isoform a [Homo sapiens]
(410 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|182765442 homeobox A10 isoform a [Homo sapiens] 858 0.0
gi|23510366 homeobox D10 [Homo sapiens] 249 3e-66
gi|24497533 homeobox C10 [Homo sapiens] 218 1e-56
gi|24497551 homeobox A10 isoform b [Homo sapiens] 188 7e-48
gi|194363768 homeobox D9 [Homo sapiens] 146 4e-35
gi|24497547 homeobox C9 [Homo sapiens] 136 4e-32
gi|23097236 homeobox A9 [Homo sapiens] 128 8e-30
gi|15029508 homeobox B9 [Homo sapiens] 126 4e-29
gi|23510368 homeobox D11 [Homo sapiens] 122 4e-28
gi|5031759 homeobox A11 [Homo sapiens] 118 8e-27
gi|7657166 homeobox C11 [Homo sapiens] 109 4e-24
gi|4504469 homeobox B5 [Homo sapiens] 102 5e-22
gi|24497517 homeobox A5 [Homo sapiens] 99 9e-21
gi|24497536 homeobox C13 [Homo sapiens] 97 2e-20
gi|15029506 homeobox D8 [Homo sapiens] 96 8e-20
gi|19923391 homeobox D3 [Homo sapiens] 94 2e-19
gi|85068580 homeobox B7 [Homo sapiens] 94 2e-19
gi|24497513 homeobox A3 isoform a [Homo sapiens] 92 1e-18
gi|13562112 homeobox A3 isoform a [Homo sapiens] 92 1e-18
gi|24497526 homeobox B1 [Homo sapiens] 92 1e-18
gi|23397672 homeobox D4 [Homo sapiens] 91 2e-18
gi|27804315 homeobox C12 [Homo sapiens] 91 2e-18
gi|11321638 homeobox C5 [Homo sapiens] 91 2e-18
gi|13273317 homeobox B8 [Homo sapiens] 91 2e-18
gi|13375632 homeobox D1 [Homo sapiens] 90 3e-18
gi|12056969 homeobox C8 [Homo sapiens] 90 3e-18
gi|23503237 homeobox B6 [Homo sapiens] 89 6e-18
gi|24497538 homeobox C4 [Homo sapiens] 89 7e-18
gi|24497540 homeobox C4 [Homo sapiens] 89 7e-18
gi|84570137 homeobox B3 [Homo sapiens] 89 7e-18
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 858 bits (2216), Expect = 0.0
Identities = 410/410 (100%), Positives = 410/410 (100%)
Query: 1 MSARKGYLLPSPNYPTTMSCSESPAANSFLVDSLISSGRGEAGGGGGGAGGGGGGGYYAH 60
MSARKGYLLPSPNYPTTMSCSESPAANSFLVDSLISSGRGEAGGGGGGAGGGGGGGYYAH
Sbjct: 1 MSARKGYLLPSPNYPTTMSCSESPAANSFLVDSLISSGRGEAGGGGGGAGGGGGGGYYAH 60
Query: 61 GGVYLPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGGGLGPGAHGYGPSPIDLWLD 120
GGVYLPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGGGLGPGAHGYGPSPIDLWLD
Sbjct: 61 GGVYLPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGGGLGPGAHGYGPSPIDLWLD 120
Query: 121 APRSCRMEPPDGPPPPPQQQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPK 180
APRSCRMEPPDGPPPPPQQQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPK
Sbjct: 121 APRSCRMEPPDGPPPPPQQQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPK 180
Query: 181 VSATAAELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGP 240
VSATAAELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGP
Sbjct: 181 VSATAAELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGP 240
Query: 241 FPAQPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAE 300
FPAQPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAE
Sbjct: 241 FPAQPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAE 300
Query: 301 ELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMY 360
ELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMY
Sbjct: 301 ELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMY 360
Query: 361 LTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS 410
LTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS
Sbjct: 361 LTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS 410
>gi|23510366 homeobox D10 [Homo sapiens]
Length = 340
Score = 249 bits (636), Expect = 3e-66
Identities = 175/398 (43%), Positives = 217/398 (54%), Gaps = 70/398 (17%)
Query: 21 SESPAANSFLVDSLISSGRGEAGGGGGGAGGGGGGGYYAHGGVYLPP-AADL-PYGLQSC 78
+ SPAAN+FLVDSLIS+ R ++ Y + +Y+PP +AD+ YG+Q+C
Sbjct: 5 NSSPAANTFLVDSLISACRSDSF-------------YSSSASMYMPPPSADMGTYGMQTC 51
Query: 79 GLFPTLGGKRNEAASPGSGGGGGGLGPGAHGYGPSPIDLWLDAPRSCRMEPPDGPPPPPQ 138
GL P+L + + +G H Y P +D W D RSCR+E P
Sbjct: 52 GLLPSLAKREVNHQN---------MGMNVHPYIPQ-VDSWTDPNRSCRIEQP-------- 93
Query: 139 QQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELAPFPRGPPPD 198
Q +CSF NIKEES+ C+Y +DK K+ +AE+ + R P+
Sbjct: 94 -----------VTQQVPTCSFTTNIKEESNCCMY--SDKRNKL--ISAEVPSYQR-LVPE 137
Query: 199 GCALGTSSGVPVPGYFRLSQAYGTAKG--YGSGGGGAQQLGAGPFPAQPPGRGFDLPPAL 256
C + VPVPGYFRLSQ Y T K Y + G+ + P G P L
Sbjct: 138 SCPVENPE-VPVPGYFRLSQTYATGKTQEYNNSPEGSSTV---MLQLNPRGAA---KPQL 190
Query: 257 ASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSESSKASPE- 315
++ +K S PT E A EE S +E S +SPE
Sbjct: 191 SAAQLQMEKKMNEPVSGQEPTKVSQV-------ESPEAKGGLPEERS-CLAEVSVSSPEV 242
Query: 316 --KDSLGNSKGEN-AANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRS 372
K+S K + +NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEIS+S
Sbjct: 243 QEKESKEEIKSDTPTSNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKS 302
Query: 373 VHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS 410
V+LTDRQVKIWFQNRRMKLKKM+RENRIRELTAN FS
Sbjct: 303 VNLTDRQVKIWFQNRRMKLKKMSRENRIRELTANLTFS 340
>gi|24497533 homeobox C10 [Homo sapiens]
Length = 342
Score = 218 bits (554), Expect = 1e-56
Identities = 154/368 (41%), Positives = 196/368 (53%), Gaps = 48/368 (13%)
Query: 49 AGGGGGGGYYAHGGVYLPPAADLPYG-LQSCGLFPTLGGKRNEAASPGSGGGGGGLGPGA 107
A GGG Y G+Y+ +D G ++ CGL P+L KR+E +SP L
Sbjct: 17 AAPGGGERYSRSAGMYMQSGSDFNCGVMRGCGLAPSLS-KRDEGSSPS-------LALNT 68
Query: 108 HGYGPSPIDLWLDAPRSCRMEPPDGPPPPPQQQPPPPPQPPQPAPQATSCSFAQNIKEES 167
+ S +D W D + R+E P G P +SCS+ ++KEE+
Sbjct: 69 YPSYLSQLDSWGDPKAAYRLEQPVGRP-------------------LSSCSYPPSVKEEN 109
Query: 168 SYCLYDSADKCPKVSATAAELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYG 227
C+Y SA+K K AA + P P+ C LG VPVP Y+R S +Y +A
Sbjct: 110 VCCMY-SAEKRAKSGPEAALYSH----PLPESC-LGEHE-VPVPSYYRASPSY-SALDKT 161
Query: 228 SGGGGAQQLGAGPFPAQ----PPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSG 283
GA A PF + P + P S K + P S
Sbjct: 162 PHCSGANDFEA-PFEQRASLNPRAEHLESPQLGGKVSFPETPKSDSQTPSPNEIKTEQSL 220
Query: 284 GGSQGDEEAHASSSAAEELSPAPSESSKASPEKDSLGNSKGENAA-NWLTAKSGRKKRCP 342
G +G S S +E+ ++SS + + ++ K EN NWLTAKSGRKKRCP
Sbjct: 221 AGPKG------SPSESEKERAKAADSSPDTSDNEAKEEIKAENTTGNWLTAKSGRKKRCP 274
Query: 343 YTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRE 402
YTKHQTLELEKEFLFNMYLTRERRLEIS++++LTDRQVKIWFQNRRMKLKKMNRENRIRE
Sbjct: 275 YTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRE 334
Query: 403 LTANFNFS 410
LT+NFNF+
Sbjct: 335 LTSNFNFT 342
>gi|24497551 homeobox A10 isoform b [Homo sapiens]
Length = 94
Score = 188 bits (478), Expect = 7e-48
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 320 GNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQ 379
GNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQ
Sbjct: 4 GNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQ 63
Query: 380 VKIWFQNRRMKLKKMNRENRIRELTANFNFS 410
VKIWFQNRRMKLKKMNRENRIRELTANFNFS
Sbjct: 64 VKIWFQNRRMKLKKMNRENRIRELTANFNFS 94
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 146 bits (368), Expect = 4e-35
Identities = 112/319 (35%), Positives = 144/319 (45%), Gaps = 64/319 (20%)
Query: 132 GPPPPPQQQPPP--PPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELA 189
GPP P Q P P A + SCSFA S+ + + P +A + L
Sbjct: 39 GPPGPGAQGRPAGVADGPAATAAEFASCSFAPRSAVFSAS--WSAVPSQPPAAAAMSGLY 96
Query: 190 PFPRGPPPDGCALGTSSG-------VPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFP 242
P PPP A + G P+PG+ G A G G GGGG G P P
Sbjct: 97 -HPYVPPPPLAASASEPGRYVRSWMEPLPGF------PGGAGGGGGGGGGGPGRGPSPGP 149
Query: 243 AQPP-GRGFDLPPALASGSADA------------------------ARKERALDSPP--- 274
+ P GR + + P + A A AR+ + P
Sbjct: 150 SGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSSKRTECSVARESQGSSGPEFSC 209
Query: 275 ---------------PPTLACGSGGGSQGDEEAHASSS-AAEELSPAPSESSKASPEKDS 318
P G+ G+ G E A S S E + P++
Sbjct: 210 NSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQ 269
Query: 319 LGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDR 378
L AANW+ A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+RR E++R ++LT+R
Sbjct: 270 L--DPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTER 327
Query: 379 QVKIWFQNRRMKLKKMNRE 397
QVKIWFQNRRMK+KKM++E
Sbjct: 328 QVKIWFQNRRMKMKKMSKE 346
Score = 35.8 bits (81), Expect = 0.072
Identities = 44/166 (26%), Positives = 55/166 (33%), Gaps = 34/166 (20%)
Query: 40 GEAGGGGGGAGGGGGGGYY------AHGGVY--------LPPAADLPYGLQSCGLFPTLG 85
G AGGGGGG GGG G G A+G Y P A S +
Sbjct: 128 GGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSS 187
Query: 86 GKRNEAA----SPGSGG---------------GGGGLGPGAHGYGPSPIDLWLDAPRSCR 126
KR E + S GS G GG GPGA G G + P +C
Sbjct: 188 SKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGA-GIGAATGTGGSSEPSACS 246
Query: 127 MEPPDGPPPPPQQQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLY 172
P G +++ PQ Q P + ++ C Y
Sbjct: 247 DHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPY 292
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 136 bits (342), Expect = 4e-32
Identities = 80/177 (45%), Positives = 102/177 (57%), Gaps = 31/177 (17%)
Query: 237 GAGPFPAQPPG-RGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHAS 295
GA FP+ P G R + L P D+ P CG G G + + S
Sbjct: 102 GAVSFPSFPAGGRHYALKP----------------DAYPGRRADCGPGEGRSYPDYMYGS 145
Query: 296 SSAAEELSPAPSESSKASPEKDSLGNSKGEN----------AANWLTAKSGRKKRCPYTK 345
+ +P + SPE D+L SK + ANW+ A+S RKKRCPYTK
Sbjct: 146 PGELRDRAP----QTLPSPEADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTK 201
Query: 346 HQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRE 402
+QTLELEKEFLFNMYLTR+RR E++R ++LT+RQVKIWFQNRRMK+KKMN+E +E
Sbjct: 202 YQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKE 258
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 128 bits (322), Expect = 8e-30
Identities = 70/119 (58%), Positives = 83/119 (69%), Gaps = 9/119 (7%)
Query: 279 ACGSGGGSQGDEEAHASSSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRK 338
ACGS D E S A E + A +ES P D AANWL A+S RK
Sbjct: 158 ACGS---PPVDREKQPSEGAFSE-NNAENESGGDKPPIDP-----NNPAANWLHARSTRK 208
Query: 339 KRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRE 397
KRCPYTKHQTLELEKEFLFNMYLTR+RR E++R ++LT+RQVKIWFQNRRMK+KK+N++
Sbjct: 209 KRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 267
>gi|15029508 homeobox B9 [Homo sapiens]
Length = 250
Score = 126 bits (316), Expect = 4e-29
Identities = 71/146 (48%), Positives = 88/146 (60%), Gaps = 12/146 (8%)
Query: 257 ASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEEL-----SPAPSESSK 311
A G AA K L P L QG E +SA E P ++
Sbjct: 108 APGQGQAAVKAEPLLGAPGELL-------KQGTPEYSLETSAGREAVLSNQRPGYGDNKI 160
Query: 312 ASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISR 371
+D + +ANWL A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+RR E++R
Sbjct: 161 CEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVAR 220
Query: 372 SVHLTDRQVKIWFQNRRMKLKKMNRE 397
++L++RQVKIWFQNRRMK+KKMN+E
Sbjct: 221 LLNLSERQVKIWFQNRRMKMKKMNKE 246
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 122 bits (307), Expect = 4e-28
Identities = 107/339 (31%), Positives = 139/339 (41%), Gaps = 74/339 (21%)
Query: 73 YGLQSCGLFPTLGGKRNEAASPGSGGGG-GGLGPGAHGYGPSPIDLWLDAPRSCRMEPPD 131
YGL+ +P GG +A GS GGG GG G GA GY P + A +
Sbjct: 66 YGLERAK-WPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAP-----YYAAAAAAAAAAAA 119
Query: 132 GPPPPPQQQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELAPF 191
Q++ PP A + P V A E
Sbjct: 120 AEEAAMQRELLPP------------------------------AGRRPDVLFKAPEPVCA 149
Query: 192 PRGPP--PDGCALGTSSGVPVPGYFR--LSQAYGTAKGYGSGGGGAQQLGAGPFPAQPPG 247
GPP P G A S V G Q Y A G G Q P P QP G
Sbjct: 150 APGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPGPPFAG---PQPPPPPAPPQPEG 206
Query: 248 RGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPS 307
P +G + +A P A GSGG +G
Sbjct: 207 AADKGDPRTGAGGGGGSPCTKATPGSEPKGAAEGSGGDGEGPP----------------- 249
Query: 308 ESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRL 367
G + E +++ + + RKKRCPYTK+Q ELE+EF FN+Y+ +E+RL
Sbjct: 250 ------------GEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRL 297
Query: 368 EISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTAN 406
++SR ++LTDRQVKIWFQNRRMK KK+NR+ R++ T N
Sbjct: 298 QLSRMLNLTDRQVKIWFQNRRMKEKKLNRD-RLQYFTGN 335
Score = 55.8 bits (133), Expect = 7e-08
Identities = 43/131 (32%), Positives = 51/131 (38%), Gaps = 25/131 (19%)
Query: 36 SSGRGEAGGGGGGAGGGGGG--GYYAHGGVYLPPAADLPYGLQSCGLFPTLGGKRN---- 89
S+G G +GGG GG GGG GG YYA AA L P G + +
Sbjct: 83 SAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLFK 142
Query: 90 ----EAASPGSGGGGGGLGP------GAHGYGPSPIDLWLDAPRSCRMEPPDGPPPPPQQ 139
A+PG G G G +G P D + +A PP
Sbjct: 143 APEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPG---------PPFAGP 193
Query: 140 QPPPPPQPPQP 150
QPPPPP PPQP
Sbjct: 194 QPPPPPAPPQP 204
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 118 bits (296), Expect = 8e-27
Identities = 72/154 (46%), Positives = 96/154 (62%), Gaps = 12/154 (7%)
Query: 253 PPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSESSKA 312
PPA + SA AA A + P T + SGGG E A +AAEE S +
Sbjct: 169 PPAATATSAAAA----AAATGAPATSSSDSGGGGGCRETA----AAAEEKERRRRPESSS 220
Query: 313 SPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRS 372
SPE S E+ A + + RKKRCPYTK+Q ELE+EF F++Y+ +E+RL++SR
Sbjct: 221 SPESSS---GHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRM 277
Query: 373 VHLTDRQVKIWFQNRRMKLKKMNRENRIRELTAN 406
++LTDRQVKIWFQNRRMK KK+NR+ R++ +AN
Sbjct: 278 LNLTDRQVKIWFQNRRMKEKKINRD-RLQYYSAN 310
>gi|7657166 homeobox C11 [Homo sapiens]
Length = 304
Score = 109 bits (273), Expect = 4e-24
Identities = 60/138 (43%), Positives = 85/138 (61%), Gaps = 6/138 (4%)
Query: 274 PPPTLACGSGGGSQGDEEAHASS---SAAEELSPAPSESSKASPEKDSLGNSKGENAANW 330
PP C G ++G+ EA +S S AE + A +E +P +S + A
Sbjct: 165 PPAEPPCSGKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKG 224
Query: 331 LT--AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRR 388
A RKKRCPY+K Q ELE+EF FN+Y+ +E+RL++SR ++LTDRQVKIWFQNRR
Sbjct: 225 AAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRR 284
Query: 389 MKLKKMNRENRIRELTAN 406
MK KK++R+ R++ + N
Sbjct: 285 MKEKKLSRD-RLQYFSGN 301
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 102 bits (255), Expect = 5e-22
Identities = 85/257 (33%), Positives = 118/257 (45%), Gaps = 40/257 (15%)
Query: 191 FPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAK-GYGSGG---------GGAQQLGAG- 239
+P GP D L SG + G +R A T GY G + GA
Sbjct: 13 YPNGP--DYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRSSASSSHFGAVG 70
Query: 240 ------PFPAQPP-------GRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGS 286
P PAQ P P +L + D+ + + SP + S
Sbjct: 71 ESSRAFPAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAKPSASSPSDQATSASSSANF 130
Query: 287 QGDEEAHASSS---AAEELS--------PAPSESSKASPEKDS---LGNSKGENAANWLT 332
+EA ASS AA +LS P P +S A+PE + + + ++ +T
Sbjct: 131 TEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQIFPWMRKLHISHDMT 190
Query: 333 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLK 392
G++ R YT++QTLELEKEF FN YLTR RR+EI+ ++ L++RQ+KIWFQNRRMK K
Sbjct: 191 GPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWK 250
Query: 393 KMNRENRIRELTANFNF 409
K N+ + TA F
Sbjct: 251 KDNKLKSMSLATAGSAF 267
Score = 29.6 bits (65), Expect = 5.2
Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 8/118 (6%)
Query: 93 SPGSGGGGGGLGPGAHGY-GPSPIDLWLDAPRSCRMEPPDGPPPPPQQQPPPPPQPPQPA 151
S S G +G + + P+ + A SC + P+ P P P+
Sbjct: 59 SSASSSHFGAVGESSRAFPAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAKPSASSPS 118
Query: 152 PQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELAPFPRGPPPDGCALGTSSGVP 209
QATS S + N E SA P+ +A+ R P + TS+ P
Sbjct: 119 DQATSASSSANFTEIDE----ASASSEPEEAASQLSSPSLARAQPE---PMATSTAAP 169
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 98.6 bits (244), Expect = 9e-21
Identities = 76/246 (30%), Positives = 110/246 (44%), Gaps = 43/246 (17%)
Query: 191 FPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAK-GYGSGGGGAQ--QLGAGPFPAQPPG 247
+P GP G S V FR S + + + GYG G + G+G F +
Sbjct: 13 YPNGPDYQLHNYGDHSSVSEQ--FRDSASMHSGRYGYGYNGMDLSVGRSGSGHFGSGERA 70
Query: 248 RGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAH-------------- 293
R + + A ++ + SP P L C + S G + H
Sbjct: 71 RSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKNSLSNSSGASA 130
Query: 294 -------------ASSSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLT-------- 332
++S AEE +PA SE + A E ++ + W+
Sbjct: 131 DAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQ-IYPWMRKLHISHDN 189
Query: 333 --AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMK 390
G++ R YT++QTLELEKEF FN YLTR RR+EI+ ++ L++RQ+KIWFQNRRMK
Sbjct: 190 IGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMK 249
Query: 391 LKKMNR 396
KK N+
Sbjct: 250 WKKDNK 255
>gi|24497536 homeobox C13 [Homo sapiens]
Length = 330
Score = 97.4 bits (241), Expect = 2e-20
Identities = 107/405 (26%), Positives = 146/405 (36%), Gaps = 131/405 (32%)
Query: 32 DSLISSGRGEAGGGGGGAGGGGGGGYYAHGGVYLPPAADLPYGLQSCGLFPTLGGKRNEA 91
DS SG G GGGGGG GG GGG
Sbjct: 21 DSAAESGIGGGGGGGGGGTGGAGGGC--------------------------------SG 48
Query: 92 ASPGSGGGGGGLG---PGAH----------GYGPSPIDLWLDAPRSCRMEPPDGPPPPPQ 138
ASPG GLG P +H G P+P L AP+ D P P
Sbjct: 49 ASPGKAPSMDGLGSSCPASHCRDLLPHPVLGRPPAP----LGAPQGAVYT--DIPAPEAA 102
Query: 139 QQPPPPPQPPQPAPQATS-----------CSFAQNIKEESSYCLYDSADKCPK------- 180
+Q PPP PP + C + N+ + C Y DK P+
Sbjct: 103 RQCAPPPAPPTSSSATLGYGYPFGGSYYGCRLSHNVNLQQKPCAYHPGDKYPEPSGALPG 162
Query: 181 --VSATAAELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGA 238
+S+ A E A +P SS +PGY +S G +
Sbjct: 163 DDLSSRAKEFAFYPSF---------ASSYQAMPGYLDVSVVPGIS--------------- 198
Query: 239 GPFPAQPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSA 298
P R L P + AL + + C + + AH S
Sbjct: 199 ----GHPEPRHDALIPV-------EGYQHWALSNGWDSQVYCSK----EQSQSAHLWKSP 243
Query: 299 AEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFN 358
++ P E S + + GRKKR PYTK Q ELEKE+ +
Sbjct: 244 FPDVVPLQPEVS---------------------SYRRGRKKRVPYTKVQLKELEKEYAAS 282
Query: 359 MYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIREL 403
++T+E+R IS + +L++RQV IWFQNRR+K KK+ +++ L
Sbjct: 283 KFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSKAPHL 327
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 95.5 bits (236), Expect = 8e-20
Identities = 74/207 (35%), Positives = 97/207 (46%), Gaps = 33/207 (15%)
Query: 226 YGSGGGG----AQQLGAGPFPAQPP---------GRGFD-LPPALASGSA--DAARKERA 269
YG+ G Q A P P+ PP GRG + P S +A AA
Sbjct: 54 YGNSAAGFPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPP 113
Query: 270 LDSPPPPTLACGS-----------GGGSQGDEEAHASSSAAE--ELSPAPSESSKASPEK 316
PPPP CG G + + + AE + S S +
Sbjct: 114 HPPPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDP 173
Query: 317 DSLGNSKGENAA-NWL---TAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRS 372
D L S + W+ A R+ R Y++ QTLELEKEFLFN YLTR+RR+E+S +
Sbjct: 174 DHLNQSSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHA 233
Query: 373 VHLTDRQVKIWFQNRRMKLKKMNRENR 399
+ LT+RQVKIWFQNRRMK KK N +++
Sbjct: 234 LALTERQVKIWFQNRRMKWKKENNKDK 260
Score = 38.5 bits (88), Expect = 0.011
Identities = 49/179 (27%), Positives = 63/179 (35%), Gaps = 33/179 (18%)
Query: 27 NSFLVDSLISSGRGEAGGGGGGAGGGGGGGYYAH-----GGVYLPPAADLP-YGLQSCGL 80
+S+ V+ L S + A Y H GG + AA L YG + G
Sbjct: 2 SSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAGF 61
Query: 81 --FPTLGGKRNEAASPGSGGGGGGL-GPGA---HGYGPSPIDLWLDAPRSCRMEPPDGPP 134
P + P SG G GG G G H G SP + AP P
Sbjct: 62 PHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAP-----------P 110
Query: 135 PPPQQQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCP-KVSATAAELAPFP 192
PPP PPPPP P C E + + YD+ + P + AEL +P
Sbjct: 111 PPPHPPPPPPPPP---------CGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYP 160
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 94.4 bits (233), Expect = 2e-19
Identities = 67/213 (31%), Positives = 98/213 (46%), Gaps = 40/213 (18%)
Query: 196 PPDGCALGTSSGVPVPGYFRLS-----QAYGTAKGYGSGGGGAQQLGAGPFPAQPPGRGF 250
P C++ +S+ + P + GT G GGG +QPPG
Sbjct: 64 PGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGG-----------SQPPGLNS 112
Query: 251 DLPPALASGSADAARKERALDSPPPPTLACGS----GGG------SQGDEEAHASSSAAE 300
+ P PPPPTL S GGG G + +S++ ++
Sbjct: 113 EQQPPQPP--------------PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISK 158
Query: 301 ELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMY 360
++ P ES + S +K+S + + ++ R YT Q +ELEKEF FN Y
Sbjct: 159 QIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRY 218
Query: 361 LTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 393
L R RR+E++ ++LT+RQ+KIWFQNRRMK KK
Sbjct: 219 LCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 251
Score = 37.7 bits (86), Expect = 0.019
Identities = 39/136 (28%), Positives = 50/136 (36%), Gaps = 33/136 (24%)
Query: 44 GGGGGAGGGGGGGYYAHGGVYLPPAA----DLPYGLQSCGLFPTL--------GGKRNEA 91
GG G + GY Y PPAA D Y +C + + G + N +
Sbjct: 30 GGYGYSKTTDTYGYSTPHQPYPPPAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNGS 89
Query: 92 AS-PGSGGGGGGLGPGAHGYGPSPIDLWLDAPRSCRMEPPDGPPPPPQQQPPPPPQP--- 147
PG+G GG G G P L + +PP PPPPP P P P
Sbjct: 90 CMRPGTGNSQGG------GGGSQPPGL------NSEQQPPQPPPPPPTLPPSSPTNPGGG 137
Query: 148 -----PQPAPQATSCS 158
P+ P A+S S
Sbjct: 138 VPAKKPKGGPNASSSS 153
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 94.0 bits (232), Expect = 2e-19
Identities = 77/214 (35%), Positives = 102/214 (47%), Gaps = 35/214 (16%)
Query: 186 AELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYG---SGGGGAQQLGAGPFP 242
A + F G P+ + +S PGY S A A G GGG A Q AG +
Sbjct: 16 ASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYPGGGGMAGQSAAGVYA 75
Query: 243 AQPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEEL 302
A G+ L P+ S + A E+ L P A +G Q D + A S+
Sbjct: 76 A-----GYGLEPS--SFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNF---- 124
Query: 303 SPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLT 362
+ P S G + K GR+ YT++QTLELEKEF +N YLT
Sbjct: 125 --------RIYPWMRSSGTDR----------KRGRQT---YTRYQTLELEKEFHYNRYLT 163
Query: 363 RERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 396
R RR+EI+ ++ LT+RQ+KIWFQNRRMK KK N+
Sbjct: 164 RRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 91.7 bits (226), Expect = 1e-18
Identities = 75/220 (34%), Positives = 103/220 (46%), Gaps = 24/220 (10%)
Query: 195 PPPDGCALGTSSGV--PVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFPAQPPGRG--- 249
P P ALG P S A G K + + L A P +QPP G
Sbjct: 32 PYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPP--SQPPSLGEPP 89
Query: 250 FDLPPALASGSADAARKERALD------SPPPPTLACGSGGGSQGDEEAHASSS------ 297
PP A+ A + +PPPP+ A S A+A+ S
Sbjct: 90 LHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSP 149
Query: 298 -AAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAK---SGRKKRCPYTKHQTLELEK 353
A+++ P ES + + +K S +S GE+ A + S ++ R YT Q +ELEK
Sbjct: 150 TVAKQIFPWMKESRQNTKQKTS-SSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEK 208
Query: 354 EFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 393
EF FN YL R RR+E++ ++LT+RQ+KIWFQNRRMK KK
Sbjct: 209 EFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 248
Score = 44.3 bits (103), Expect = 2e-04
Identities = 31/65 (47%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 93 SPGSGGGGGGLGPGAHGYGPSPIDLWLDAPRSCRMEPPD--GPP--PPPQQQPPPPPQPP 148
SP S GG P AH + + L AP S +PP PP PPP Q PP PQPP
Sbjct: 54 SPSSAGGH----PKAHELSEACLRT-LSAPPS---QPPSLGEPPLHPPPPQAAPPAPQPP 105
Query: 149 QPAPQ 153
QPAPQ
Sbjct: 106 QPAPQ 110
Score = 30.4 bits (67), Expect = 3.0
Identities = 23/75 (30%), Positives = 26/75 (34%), Gaps = 14/75 (18%)
Query: 86 GKRNEAASPGSGGGGGGLGPGAHGYGPSPIDLWLDAPRSCRMEPPDGPPPP--------- 136
GK +S G + PGA GY S L P + PP PP
Sbjct: 252 GKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPAS 311
Query: 137 -----PQQQPPPPPQ 146
P PPPPPQ
Sbjct: 312 YPASLPSCAPPPPPQ 326
Score = 29.3 bits (64), Expect = 6.8
Identities = 35/126 (27%), Positives = 45/126 (35%), Gaps = 34/126 (26%)
Query: 7 YLLPSPNYPTTM-SCSESPAANSFLVDSLISSGRGEAGGGGGG-------AGGGGGGGYY 58
Y LP +YP ++ SC+ P AG G GG A G G G Y
Sbjct: 305 YGLPPASYPASLPSCAPPPPPQKRYT---------AAGAGAGGTPDYDPHAHGLQGNGSY 355
Query: 59 AH----------GGVYLPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGGGLGPGAH 108
GG Y+ P ++ L P + A+ GG G LG G H
Sbjct: 356 GTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLP------HAASGAMDYGGAGPLGSG-H 408
Query: 109 GYGPSP 114
+GP P
Sbjct: 409 HHGPGP 414
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 91.7 bits (226), Expect = 1e-18
Identities = 75/220 (34%), Positives = 103/220 (46%), Gaps = 24/220 (10%)
Query: 195 PPPDGCALGTSSGV--PVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFPAQPPGRG--- 249
P P ALG P S A G K + + L A P +QPP G
Sbjct: 32 PYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPP--SQPPSLGEPP 89
Query: 250 FDLPPALASGSADAARKERALD------SPPPPTLACGSGGGSQGDEEAHASSS------ 297
PP A+ A + +PPPP+ A S A+A+ S
Sbjct: 90 LHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSP 149
Query: 298 -AAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAK---SGRKKRCPYTKHQTLELEK 353
A+++ P ES + + +K S +S GE+ A + S ++ R YT Q +ELEK
Sbjct: 150 TVAKQIFPWMKESRQNTKQKTS-SSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEK 208
Query: 354 EFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 393
EF FN YL R RR+E++ ++LT+RQ+KIWFQNRRMK KK
Sbjct: 209 EFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 248
Score = 44.3 bits (103), Expect = 2e-04
Identities = 31/65 (47%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 93 SPGSGGGGGGLGPGAHGYGPSPIDLWLDAPRSCRMEPPD--GPP--PPPQQQPPPPPQPP 148
SP S GG P AH + + L AP S +PP PP PPP Q PP PQPP
Sbjct: 54 SPSSAGGH----PKAHELSEACLRT-LSAPPS---QPPSLGEPPLHPPPPQAAPPAPQPP 105
Query: 149 QPAPQ 153
QPAPQ
Sbjct: 106 QPAPQ 110
Score = 30.4 bits (67), Expect = 3.0
Identities = 23/75 (30%), Positives = 26/75 (34%), Gaps = 14/75 (18%)
Query: 86 GKRNEAASPGSGGGGGGLGPGAHGYGPSPIDLWLDAPRSCRMEPPDGPPPP--------- 136
GK +S G + PGA GY S L P + PP PP
Sbjct: 252 GKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPAS 311
Query: 137 -----PQQQPPPPPQ 146
P PPPPPQ
Sbjct: 312 YPASLPSCAPPPPPQ 326
Score = 29.3 bits (64), Expect = 6.8
Identities = 35/126 (27%), Positives = 45/126 (35%), Gaps = 34/126 (26%)
Query: 7 YLLPSPNYPTTM-SCSESPAANSFLVDSLISSGRGEAGGGGGG-------AGGGGGGGYY 58
Y LP +YP ++ SC+ P AG G GG A G G G Y
Sbjct: 305 YGLPPASYPASLPSCAPPPPPQKRYT---------AAGAGAGGTPDYDPHAHGLQGNGSY 355
Query: 59 AH----------GGVYLPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGGGLGPGAH 108
GG Y+ P ++ L P + A+ GG G LG G H
Sbjct: 356 GTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLP------HAASGAMDYGGAGPLGSG-H 408
Query: 109 GYGPSP 114
+GP P
Sbjct: 409 HHGPGP 414
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 91.7 bits (226), Expect = 1e-18
Identities = 75/222 (33%), Positives = 98/222 (44%), Gaps = 46/222 (20%)
Query: 190 PFPRGPP----PDGCA----------LGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQ 235
PFP P P C+ LG S G GYF S +YG G S G GA
Sbjct: 75 PFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDG--GYFHPS-SYGAQLGGLSDGYGAGG 131
Query: 236 LGAGPFPAQPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHAS 295
G GP+P Q P G + + A AD +++ P P A
Sbjct: 132 AGPGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPNTPT-------------AR 178
Query: 296 SSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEF 355
+ ++ P +++K S + LG+ G R +T Q ELEKEF
Sbjct: 179 TFDWMKVKRNPPKTAKVS--EPGLGSPSG--------------LRTNFTTRQLTELEKEF 222
Query: 356 LFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRE 397
FN YL+R RR+EI+ ++ L + QVKIWFQNRRMK KK RE
Sbjct: 223 HFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 264
Score = 28.9 bits (63), Expect = 8.8
Identities = 33/111 (29%), Positives = 40/111 (36%), Gaps = 24/111 (21%)
Query: 24 PAANSFLVDSLISSGRGEAGGGGGGAGGGGGGGYYAHG-----GVYLPPAADLPYGLQSC 78
P +++ VDS S GR GGG GY A GV P +A Y +C
Sbjct: 32 PPSSAQAVDSYASEGR--YGGGLSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSGYAPAAC 89
Query: 79 GLFPTLGGKRNEAASPGSGGGG-----------GGL----GPGAHGYGPSP 114
P+ G + G GG GGL G G G GP P
Sbjct: 90 S--PSYGPSQYYPLGQSEGDGGYFHPSSYGAQLGGLSDGYGAGGAGPGPYP 138
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 90.9 bits (224), Expect = 2e-18
Identities = 60/158 (37%), Positives = 78/158 (49%), Gaps = 11/158 (6%)
Query: 237 GAGPFPAQP-PGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHAS 295
G+GP P P RG P G A + PPP G+ SQ D + S
Sbjct: 64 GSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQPPS 123
Query: 296 SSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEF 355
+A ++ + K NS N T ++ R YT+ Q LELEKEF
Sbjct: 124 GTALKQPAVVYPWMKKVHV------NSVNPN----YTGGEPKRSRTAYTRQQVLELEKEF 173
Query: 356 LFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 393
FN YLTR RR+EI+ ++ L++RQ+KIWFQNRRMK KK
Sbjct: 174 HFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK 211
Score = 32.0 bits (71), Expect = 1.0
Identities = 36/119 (30%), Positives = 42/119 (35%), Gaps = 37/119 (31%)
Query: 47 GGAGGGGGGGYY---AHGGVYLPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGGGL 103
GG G G YY A G + PP GL+P E GSG G G
Sbjct: 26 GGYLGEQGADYYGGGAQGADFQPP-----------GLYPR--PDFGEQPFGGSGPGPGSA 72
Query: 104 GPGAHGYGPSPIDLWLDAPRSCRMEPPDGP----PPPPQQQPPPPPQPPQPAPQATSCS 158
P A G+G + P GP P + P PP PP P P A + S
Sbjct: 73 LP-ARGHG----------------QEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYS 114
>gi|27804315 homeobox C12 [Homo sapiens]
Length = 282
Score = 90.9 bits (224), Expect = 2e-18
Identities = 86/259 (33%), Positives = 110/259 (42%), Gaps = 56/259 (21%)
Query: 179 PKVSATAAELAPFPRGPPP---DGCALGTSSGVPVPGY--------FRLSQAYGTA---- 223
P A+ A+L P P + C+L S P GY L+ +G
Sbjct: 27 PNFRASGAQLPGLPSLSYPRRDNVCSLSWPSAEPCNGYPQPYLGSPVSLNPPFGRTCELA 86
Query: 224 -----KGY-----GSGGGGA-------QQLGAGPF-------PAQPPGRGFDLPPALASG 259
KGY GGGG + GAGP P+ PP GF A G
Sbjct: 87 RVEDGKGYYREPCAEGGGGGLKREERGRDPGAGPGAALLPLEPSGPPALGFKYDYAAGGG 146
Query: 260 SADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSP---APSESSKASPEK 316
D PP +C S E+ +SSS E + A S SP
Sbjct: 147 GGDGGGGAGPPHDPP----SCQS-------LESDSSSSLLNEGNKGAGAGDPGSLVSPLN 195
Query: 317 DSLGNSKGENAANWLTAKS-GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHL 375
G + A W S RKKR PY+K Q ELE EFL N ++TR+RR E+S ++L
Sbjct: 196 P--GGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNL 253
Query: 376 TDRQVKIWFQNRRMKLKKM 394
+D+QVKIWFQNRRMK K++
Sbjct: 254 SDQQVKIWFQNRRMKKKRL 272
Score = 35.0 bits (79), Expect = 0.12
Identities = 29/64 (45%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 42 AGGGGGGAGGGGGGGYYAHGGVYLPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGG 101
A GGGGG G G P AA LP L+ G P LG K + AA G G GGG
Sbjct: 100 AEGGGGGLKREERGRDPGAG----PGAALLP--LEPSGP-PALGFKYDYAAGGGGGDGGG 152
Query: 102 GLGP 105
G GP
Sbjct: 153 GAGP 156
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 90.5 bits (223), Expect = 2e-18
Identities = 65/171 (38%), Positives = 83/171 (48%), Gaps = 26/171 (15%)
Query: 249 GFDL----PPALASGS---ADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEE 301
G DL PP S S D A RA P + A G DE A + +
Sbjct: 42 GLDLSITFPPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQ 101
Query: 302 LS--PAPSESSKASPEKDSLGNSKGENAA-----------NWLTA------KSGRKKRCP 342
+ PA E +K+S E G+ A W+T G++ R
Sbjct: 102 KAARPALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTS 161
Query: 343 YTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 393
YT++QTLELEKEF FN YLTR RR+EI+ ++ L +RQ+KIWFQNRRMK KK
Sbjct: 162 YTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKK 212
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 90.5 bits (223), Expect = 2e-18
Identities = 53/107 (49%), Positives = 71/107 (66%), Gaps = 12/107 (11%)
Query: 294 ASSSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKK-RCPYTKHQTLELE 352
A+S EE +E S+ SP L AA +GR++ R Y+++QTLELE
Sbjct: 114 AASGLGEE-----AEGSEQSPSPTQLFPWMRPQAA------AGRRRGRQTYSRYQTLELE 162
Query: 353 KEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENR 399
KEFLFN YLTR+RR+E+S ++ LT+RQVKIWFQNRRMK KK N +++
Sbjct: 163 KEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDK 209
>gi|13375632 homeobox D1 [Homo sapiens]
Length = 328
Score = 90.1 bits (222), Expect = 3e-18
Identities = 87/271 (32%), Positives = 104/271 (38%), Gaps = 47/271 (17%)
Query: 133 PPPPPQQQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELAPFP 192
P P P P P PP APQ C+ E +Y P +A A+
Sbjct: 61 PSPSPPAAPARPSVPPPAAPQYAQCTL------EGAY----EPGAAPAAAAGGADYGFLG 110
Query: 193 RGPPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFPAQPPGRGFDL 252
GP D PG L +A + A G G F
Sbjct: 111 SGPAYD-----------FPGV--LGRAADDGGSHVHYATSAVFSGGGSF----------- 146
Query: 253 PPALASGSADAARKERALDSPPP-PTLACGSGGGSQG--DEEAHASSSAAEELSPA---P 306
L SG D A A P P P S G G + A + + +SPA P
Sbjct: 147 ---LLSGQVDYA----AFGEPGPFPACLKASADGHPGAFQTASPAPGTYPKSVSPASGLP 199
Query: 307 SESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERR 366
+ S K SK A + A R ++ Q ELEKEF FN YLTR RR
Sbjct: 200 AAFSTFEWMKVKRNASKKGKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARR 259
Query: 367 LEISRSVHLTDRQVKIWFQNRRMKLKKMNRE 397
+EI+ +HL D QVKIWFQNRRMK KK RE
Sbjct: 260 IEIANCLHLNDTQVKIWFQNRRMKQKKRERE 290
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 90.1 bits (222), Expect = 3e-18
Identities = 59/141 (41%), Positives = 80/141 (56%), Gaps = 18/141 (12%)
Query: 275 PPTLAC-GSGGGSQGDEEAHASS--SAAEELSPAPSESSKASPEKDSLGNSKGENAAN-- 329
P +L+C G G E S A +E S K+S +S S+G+ N
Sbjct: 76 PCSLSCHGDASKFYGYEALPRQSLYGAQQEASVVQYPDCKSSANTNS---SEGQGHLNQN 132
Query: 330 --------WLT--AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQ 379
W+ A R R Y+++QTLELEKEFLFN YLTR+RR+E+S ++ LT+RQ
Sbjct: 133 SSPSLMFPWMRPHAPGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQ 192
Query: 380 VKIWFQNRRMKLKKMNRENRI 400
VKIWFQNRRMK KK N ++++
Sbjct: 193 VKIWFQNRRMKWKKENNKDKL 213
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 89.4 bits (220), Expect = 6e-18
Identities = 52/133 (39%), Positives = 79/133 (59%), Gaps = 16/133 (12%)
Query: 289 DEEAHASSSAAEELSPAPSESSKA--SPEKDSLGNSKGENAAN----WLT---------- 332
++E+ + S A+E P E K+ + +K G ++ + + W+
Sbjct: 83 EKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSF 142
Query: 333 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLK 392
SGR+ R YT++QTLELEKEF +N YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK K
Sbjct: 143 GPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 202
Query: 393 KMNRENRIRELTA 405
K ++ +L+A
Sbjct: 203 KESKLLSASQLSA 215
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 89.0 bits (219), Expect = 7e-18
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 12/113 (10%)
Query: 296 SSAAEELSPAPSESSKASPEKDSLGNSKGENAANWL------------TAKSGRKKRCPY 343
S A+ SPAP S+ +P+ S SK W+ ++ R Y
Sbjct: 104 SGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAY 163
Query: 344 TKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 396
T+ Q LELEKEF +N YLTR RR+EI+ S+ L++RQ+KIWFQNRRMK KK +R
Sbjct: 164 TRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 89.0 bits (219), Expect = 7e-18
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 12/113 (10%)
Query: 296 SSAAEELSPAPSESSKASPEKDSLGNSKGENAANWL------------TAKSGRKKRCPY 343
S A+ SPAP S+ +P+ S SK W+ ++ R Y
Sbjct: 104 SGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAY 163
Query: 344 TKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 396
T+ Q LELEKEF +N YLTR RR+EI+ S+ L++RQ+KIWFQNRRMK KK +R
Sbjct: 164 TRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 89.0 bits (219), Expect = 7e-18
Identities = 76/257 (29%), Positives = 107/257 (41%), Gaps = 50/257 (19%)
Query: 144 PPQPPQPAP-------QATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELAPFPRGPP 196
PPQPP A Q ++CS Q++ + + + K S LAP P P
Sbjct: 32 PPQPPFQAATHLEGDYQRSACSL-QSLGNAAPH----AKSKELNGSCMRPGLAPEPLSAP 86
Query: 197 PDGCALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFPAQPPGRGFDLPPAL 256
P G P P S A +A S GGG + G P PG L +
Sbjct: 87 P---------GSPPP-----SAAPTSATSNSSNGGGPSKSGP---PKCGPGTNSTLTKQI 129
Query: 257 ASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSESSKASPEK 316
++ + + ++ P CG GGG G + S
Sbjct: 130 FPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGG------------------ 171
Query: 317 DSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLT 376
G G + + + ++ R YT Q +ELEKEF FN YL R RR+E++ ++L+
Sbjct: 172 ---GGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLS 228
Query: 377 DRQVKIWFQNRRMKLKK 393
+RQ+KIWFQNRRMK KK
Sbjct: 229 ERQIKIWFQNRRMKYKK 245
Score = 40.4 bits (93), Expect = 0.003
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 38 GRGEAGGGGGGAGGGGGGGYYAHGGVYLPPAA 69
G G GGGGGG+GG GGGG GG PP +
Sbjct: 154 GGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGS 185
Score = 35.8 bits (81), Expect = 0.072
Identities = 16/27 (59%), Positives = 16/27 (59%)
Query: 36 SSGRGEAGGGGGGAGGGGGGGYYAHGG 62
S G E GGGGG GGGGG G GG
Sbjct: 146 SPGTAEGCGGGGGGGGGGGSGGSGGGG 172
Score = 34.7 bits (78), Expect = 0.16
Identities = 25/73 (34%), Positives = 27/73 (36%), Gaps = 36/73 (49%)
Query: 34 LISSGRGEAGGGGGGAGGGGGGGYYAHGGVYLPPAADLPYGLQSCGLFPTLGGKRNEAAS 93
L ++ G A G GGG GGGGGGG S
Sbjct: 142 LKNNSPGTAEGCGGGGGGGGGGG------------------------------------S 165
Query: 94 PGSGGGGGGLGPG 106
GSGGGGGG G G
Sbjct: 166 GGSGGGGGGGGGG 178
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.133 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,737,133
Number of Sequences: 37866
Number of extensions: 1895340
Number of successful extensions: 55159
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 1217
Number of HSP's that attempted gapping in prelim test: 17428
Number of HSP's gapped (non-prelim): 18508
length of query: 410
length of database: 18,247,518
effective HSP length: 105
effective length of query: 305
effective length of database: 14,271,588
effective search space: 4352834340
effective search space used: 4352834340
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.