Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HOXD11 Sequence: fasta or formatted (338aa) NCBI GI: 23510368
Description:

homeobox D11

Referenced in:

HOX Genes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.2         48          13
 C cysteine            1.8          6           1
 D aspartate           3.3         11           1
 E glutamate           5.6         19           2
 F phenylalanine       4.7         16           3
 G glycine            14.8         50           6
 H histidine           0.6          2           1
 I isoleucine          1.2          4           1
 K lysine              4.7         16           2
 L leucine             4.7         16           2
 M methionine          1.8          6           1
 N asparagine          3.0         10           1
 P proline            12.1         41           5
 Q glutamine           4.4         15           1
 R arginine            6.2         21           2
 S serine              6.8         23           3
 T threonine           2.1          7           1
 V valine              3.0         10           1
 W tryptophan          0.6          2           1
 Y tyrosine            4.4         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   homeobox D11 
HOXA11                0.357   homeobox A11 
HOXC11                0.301   homeobox C11 
HOXA10                0.142   homeobox A10 isoform a 
HOXD9                 0.132   homeobox D9 
HOXD8                 0.127   homeobox D8 
HOXB9                 0.121   homeobox B9 
HOXB3                 0.120   homeobox B3 
HOXC10                0.117   homeobox C10 
HOXA10                0.117   homeobox A10 isoform b 
HOXD12                0.114   homeobox D12 
HOXA9                 0.114   homeobox A9 
HOXD10                0.113   homeobox D10 
HOXC9                 0.108   homeobox C9 
HOXA4                 0.107   homeobox A4 
GBX1                  0.107   gastrulation brain homeo box 1 
HOXC12                0.107   homeobox C12 
HOXD13                0.104   homeobox D13 
HOXA13                0.104   homeobox A13 
HOXB2                 0.101   homeobox B2 
HOXC13                0.099   homeobox C13 
HOXD3                 0.094   homeobox D3 
HOXA3                 0.094   homeobox A3 isoform a 
HOXA3                 0.094   homeobox A3 isoform a 
PDX1                  0.092   pancreatic and duodenal homeobox 1 
HOXB4                 0.089   homeobox B4 
HOXA5                 0.088   homeobox A5 
CDX1                  0.088   caudal type homeobox 1 
HOXB6                 0.085   homeobox B6 
HOXD4                 0.083   homeobox D4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press