Guide to the Human Genome
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Name: SPSB4 Sequence: fasta or formatted (273aa) NCBI GI: 18254460
Description:

splA/ryanodine receptor domain and SOCS box containing 4

Referenced in:

Receptor Tyrosine Kinases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         25           2
 C cysteine            0.7          2           1
 D aspartate           6.6         18           3
 E glutamate           3.7         10           1
 F phenylalanine       2.2          6           1
 G glycine             9.5         26           1
 H histidine           3.3          9           1
 I isoleucine          2.2          6           1
 K lysine              3.7         10           2
 L leucine            12.8         35           2
 M methionine          1.8          5           1
 N asparagine          2.2          6           1
 P proline             7.0         19           1
 Q glutamine           4.8         13           1
 R arginine            8.8         24           2
 S serine              6.2         17           2
 T threonine           2.6          7           1
 V valine              7.7         21           2
 W tryptophan          2.2          6           1
 Y tyrosine            2.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   splA/ryanodine receptor domain and SOCS box containi... 
SPSB1                 0.764   splA/ryanodine receptor domain and SOCS box containi...
SPSB2                 0.452   splA/ryanodine receptor domain and SOCS box contain...
SPSB2                 0.452   splA/ryanodine receptor domain and SOCS box containi...
SPSB2                 0.389   splA/ryanodine receptor domain and SOCS box contain...
FBXO45                0.236   F-box protein 45 
SPSB3                 0.069   splA/ryanodine receptor domain and SOCS box containi...
ASB2                  0.032   ankyrin repeat and SOCS box-containing protein 2 [Ho...
ASB7                  0.032   ankyrin repeat and SOCS box-containing protein 7 iso...
ASB5                  0.032   ankyrin repeat and SOCS box-containing protein 5 [Ho...
ASB1                  0.030   ankyrin repeat and SOCS box-containing protein 1 [Ho...
HERC1                 0.030   guanine nucleotide exchange factor p532 
ASB3                  0.028   ankyrin repeat and SOCS box-containing protein 3 iso...
ASB3                  0.028   ankyrin repeat and SOCS box-containing protein 3 isof...
TRIM67                0.026   tripartite motif-containing 67 
RNF123                0.026   ring finger protein 123 
TRIM9                 0.026   tripartite motif protein 9 isoform 1 
DDX1                  0.019   DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 
ASB13                 0.019   ankyrin repeat and SOCS box-containing protein 13 [H...
ASB11                 0.019   ankyrin repeat and SOCS box-containing protein 11 is...
ASB11                 0.019   ankyrin repeat and SOCS box-containing protein 11 is...
ASB9                  0.017   ankyrin repeat and SOCS box-containing 9 isoform 1 [...
BSPRY                 0.017   B-box and SPRY domain containing 
ASB8                  0.017   ankyrin repeat and SOCS box-containing 8 
BCL11A                0.015   B-cell CLL/lymphoma 11A isoform 1 
BCL11A                0.015   B-cell CLL/lymphoma 11A isoform 2 
BCL11A                0.015   B-cell CLL/lymphoma 11A isoform 3 
TULP4                 0.015   tubby like protein 4 isoform 2 
TULP4                 0.015   tubby like protein 4 isoform 1 
ASB14                 0.015   ankyrin repeat and SOCS box-containing 14 isoform 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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