Guide to the Human Genome
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Name: TRIM67 Sequence: fasta or formatted (783aa) NCBI GI: 134288906
Description:

tripartite motif-containing 67

Referenced in:

Tripartite Motif Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         76           5
 C cysteine            4.2         33           2
 D aspartate           4.7         37           2
 E glutamate           4.7         37           3
 F phenylalanine       2.7         21           2
 G glycine             9.3         73           4
 H histidine           3.3         26           1
 I isoleucine          2.4         19           2
 K lysine              4.9         38           1
 L leucine             9.6         75           3
 M methionine          1.8         14           2
 N asparagine          3.6         28           2
 P proline             6.8         53           8
 Q glutamine           5.1         40           3
 R arginine            4.5         35           1
 S serine              7.5         59           6
 T threonine           5.2         41           1
 V valine              6.6         52           2
 W tryptophan          1.0          8           1
 Y tyrosine            2.3         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tripartite motif-containing 67 
TRIM9                 0.598   tripartite motif protein 9 isoform 1 
TRIM9                 0.418   tripartite motif protein 9 isoform 2 
MID2                  0.109   midline 2 isoform 2 
MID2                  0.103   midline 2 isoform 1 
MID1                  0.103   midline 1 
MID1                  0.103   midline 1 
MID1                  0.103   midline 1 
TRIM36                0.088   tripartite motif-containing 36 isoform 1 
TRIM46                0.084   tripartite motif-containing 46 
FSD1L                 0.053   fibronectin type III and SPRY domain containing 1-li...
FSD1L                 0.052   fibronectin type III and SPRY domain containing 1-l...
FSD1                  0.045   fibronectin type III and SPRY domain containing 1 [H...
TRIM54                0.045   ring finger protein 30 isoform 2 
TRIM63                0.043   muscle specific ring finger protein 1 
TRIM55                0.033   tripartite motif-containing 55 isoform 3 
TRIM55                0.033   tripartite motif-containing 55 isoform 1 
TRIM55                0.033   tripartite motif-containing 55 isoform 2 
TRIM71                0.033   tripartite motif-containing 71 
TRIM54                0.033   ring finger protein 30 isoform 1 
FSD2                  0.032   fibronectin type III and SPRY domain containing 2 [H...
CMYA5                 0.028   cardiomyopathy associated 5 
TRIM2                 0.028   tripartite motif-containing 2 isoform 2 
TRIM2                 0.028   tripartite motif-containing 2 isoform 1 
TRIM3                 0.021   tripartite motif-containing 3 
TRIM3                 0.021   tripartite motif-containing 3 
ONECUT3               0.020   one cut homeobox 3 
DACH1                 0.020   dachshund homolog 1 isoform b 
DACH1                 0.020   dachshund homolog 1 isoform a 
DACH1                 0.020   dachshund homolog 1 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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