Guide to the Human Genome
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Name: STX7 Sequence: fasta or formatted (261aa) NCBI GI: 170932494
Description:

syntaxin 7

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         15           2
 C cysteine            0.8          2           1
 D aspartate           5.4         14           2
 E glutamate           8.8         23           2
 F phenylalanine       2.3          6           1
 G glycine             3.8         10           2
 H histidine           1.5          4           1
 I isoleucine          9.2         24           3
 K lysine              5.0         13           1
 L leucine             7.7         20           1
 M methionine          1.5          4           2
 N asparagine          3.8         10           1
 P proline             3.1          8           1
 Q glutamine          12.3         32           2
 R arginine            6.9         18           1
 S serine              8.4         22           2
 T threonine           5.4         14           2
 V valine              6.1         16           1
 W tryptophan          0.8          2           1
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   syntaxin 7 
STX12                 0.505   syntaxin 12 
TSNARE1               0.233   t-SNARE domain containing 1 
STX2                  0.160   syntaxin 2 isoform 2 
STX2                  0.154   syntaxin 2 isoform 1 
STX3                  0.150   syntaxin 3 
STX16                 0.141   syntaxin 16 isoform a 
STX16                 0.141   syntaxin 16 isoform d 
STX16                 0.141   syntaxin 16 isoform c 
STX16                 0.141   syntaxin 16 isoform b 
STX1A                 0.135   syntaxin 1A (brain) 
STX1B                 0.129   syntaxin 1B 
STX4                  0.127   syntaxin 4 
STX19                 0.062   syntaxin 19 
STX11                 0.052   syntaxin 11 
STX17                 0.050   syntaxin 17 
CEP110                0.048   centrosomal protein 110kDa 
STX8                  0.046   syntaxin 8 
TCHH                  0.046   trichohyalin 
CENPE                 0.042   centromere protein E 
MYH10                 0.040   myosin, heavy polypeptide 10, non-muscle 
ERC1                  0.040   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.040   RAB6-interacting protein 2 isoform delta 
PMFBP1                0.035   polyamine modulated factor 1 binding protein 1 isof...
PMFBP1                0.035   polyamine modulated factor 1 binding protein 1 isof...
CCDC19                0.035   nasopharyngeal epithelium specific protein 1 
LOC727832             0.031   golgi autoantigen, golgin subfamily a-like 
CROCC                 0.031   ciliary rootlet coiled-coil 
CENPF                 0.031   centromere protein F 
ERC2                  0.029   cytomatrix protein p110 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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