Guide to the Human Genome
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Name: LOC644893 Sequence: fasta or formatted (753aa) NCBI GI: 169216572
Description:

PREDICTED: hypothetical protein

Referenced in:

Melanoma Antigen Family

Other entries for this name:
alt mRNA [753aa] PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         38           2
 C cysteine            2.0         15           2
 D aspartate           2.7         20           1
 E glutamate           5.4         41           1
 F phenylalanine       2.5         19           1
 G glycine             6.9         52           2
 H histidine           1.5         11           1
 I isoleucine          4.1         31           2
 K lysine              4.9         37           2
 L leucine             9.3         70           2
 M methionine          1.6         12           1
 N asparagine          3.7         28           3
 P proline             7.6         57           1
 Q glutamine           5.2         39           2
 R arginine            4.9         37           2
 S serine             14.5        109           3
 T threonine           8.9         67           3
 V valine              5.0         38           3
 W tryptophan          2.0         15           1
 Y tyrosine            2.3         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC644893             1.000   PREDICTED: hypothetical protein 
MAGEE1                0.040   melanoma antigen family E, 1 
MUC3A                 0.023   PREDICTED: mucin 3A, cell surface associated, parti...
MUC21                 0.022   mucin 21 
MUC5B                 0.021   mucin 5, subtype B, tracheobronchial 
MUC5AC                0.020   mucin 5AC 
MUC3A                 0.019   PREDICTED: mucin 3A, intestinal 
LOC732156             0.017   PREDICTED: similar to Mucin-3A 
MUC3B                 0.017   PREDICTED: mucin 3B, cell surface associated, parti...
LOC100134138          0.017   PREDICTED: similar to mucin, partial 
MUC12                 0.017   PREDICTED: mucin 12 
FAM186A               0.016   family with sequence similarity 186, member A [Homo...
MUC17                 0.016   mucin 17 
LOC100131514          0.016   PREDICTED: similar to hCG1747327, partial 
LOC100133790          0.016   PREDICTED: intestinal mucin-like, partial 
LOC100294236          0.015   PREDICTED: similar to diffuse panbronchiolitis crit...
MUC6                  0.015   mucin 6, gastric 
SRRM2                 0.015   splicing coactivator subunit SRm300 
MUC16                 0.015   mucin 16 
MUC4                  0.014   mucin 4 isoform a 
LOC100131251          0.013   PREDICTED: hypothetical protein 
LOC100131251          0.013   PREDICTED: hypothetical protein 
LOC729792             0.013   PREDICTED: hypothetical protein 
LOC100133408          0.013   PREDICTED: similar to mucin 
LOC729792             0.013   PREDICTED: hypothetical protein 
LOC729792             0.013   PREDICTED: hypothetical protein 
LOC100294501          0.013   PREDICTED: hypothetical protein 
LOC100294249          0.013   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.013   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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