Guide to the Human Genome
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Search of human proteins with 169180100

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
         (43 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo sapiens]    87   4e-18
gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo sapiens]    87   4e-18
gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo sapiens]    87   4e-18
gi|10863895 thymosin, beta 10 [Homo sapiens]                           56   5e-09
gi|11056061 thymosin, beta 4 [Homo sapiens]                            42   1e-04
gi|34013530 thymosin-like 3 [Homo sapiens]                             41   2e-04
gi|167555119 thymosin beta15b [Homo sapiens]                           39   7e-04
gi|11496273 thymosin-like 8 [Homo sapiens]                             39   7e-04
gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens]               38   0.002
gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo ...    36   0.006
gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo ...    36   0.006
gi|239754119 PREDICTED: hypothetical protein [Homo sapiens]            35   0.013
gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo ...    35   0.013
gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo ...    35   0.013
gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo sa...    34   0.022

>gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo
          sapiens]
          Length = 43

 Score = 86.7 bits (213), Expect = 4e-18
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1  MAHKLDLEEIASLDKAKLKATEMQKNTLMTKETTEQEKWSEIS 43
          MAHKLDLEEIASLDKAKLKATEMQKNTLMTKETTEQEKWSEIS
Sbjct: 1  MAHKLDLEEIASLDKAKLKATEMQKNTLMTKETTEQEKWSEIS 43


>gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo
          sapiens]
          Length = 43

 Score = 86.7 bits (213), Expect = 4e-18
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1  MAHKLDLEEIASLDKAKLKATEMQKNTLMTKETTEQEKWSEIS 43
          MAHKLDLEEIASLDKAKLKATEMQKNTLMTKETTEQEKWSEIS
Sbjct: 1  MAHKLDLEEIASLDKAKLKATEMQKNTLMTKETTEQEKWSEIS 43


>gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo
          sapiens]
          Length = 43

 Score = 86.7 bits (213), Expect = 4e-18
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1  MAHKLDLEEIASLDKAKLKATEMQKNTLMTKETTEQEKWSEIS 43
          MAHKLDLEEIASLDKAKLKATEMQKNTLMTKETTEQEKWSEIS
Sbjct: 1  MAHKLDLEEIASLDKAKLKATEMQKNTLMTKETTEQEKWSEIS 43


>gi|10863895 thymosin, beta 10 [Homo sapiens]
          Length = 44

 Score = 56.2 bits (134), Expect = 5e-09
 Identities = 33/44 (75%), Positives = 34/44 (77%), Gaps = 1/44 (2%)

Query: 1  MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEKWSEIS 43
          MA K D+ EIAS DKAKLK TE Q KNTL TKET EQEK SEIS
Sbjct: 1  MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRSEIS 44


>gi|11056061 thymosin, beta 4 [Homo sapiens]
          Length = 44

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 1  MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
          M+ K D+ EI   DK+KLK TE Q KN L +KET EQEK
Sbjct: 1  MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEK 39


>gi|34013530 thymosin-like 3 [Homo sapiens]
          Length = 44

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 1  MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
          M+ K D+ EI   DK KLK TE Q KN L +KET EQEK
Sbjct: 1  MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEK 39


>gi|167555119 thymosin beta15b [Homo sapiens]
          Length = 45

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 1  MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
          M+ K DL E+   D++KLK T  + KNTL +KET +QEK
Sbjct: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEK 39


>gi|11496273 thymosin-like 8 [Homo sapiens]
          Length = 45

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 1  MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
          M+ K DL E+   D++KLK T  + KNTL +KET +QEK
Sbjct: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEK 39


>gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens]
          Length = 44

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 1  MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
          M+ K  + EI   DK+KLK TE Q KN L +KET EQE+
Sbjct: 1  MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQER 39


>gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo
          sapiens]
          Length = 158

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 1  MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
          M+ K +++EI    K+KLK TEMQ KN   +KE  EQEK
Sbjct: 1  MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEK 39


>gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo
          sapiens]
          Length = 158

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 1  MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
          M+ K +++EI    K+KLK TEMQ KN   +KE  EQEK
Sbjct: 1  MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEK 39


>gi|239754119 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 45

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 1  MAHKLDLEEIASLDKAKLKA-TEMQKNTLMTKETTEQEK 38
          M++K D+ ++   D+ KLK     +KNTL+ +ET +QEK
Sbjct: 1  MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEK 39


>gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo
          sapiens]
          Length = 45

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 1  MAHKLDLEEIASLDKAKLKA-TEMQKNTLMTKETTEQEK 38
          M++K D+ ++   D+ KLK     +KNTL+ +ET +QEK
Sbjct: 1  MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEK 39


>gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo
          sapiens]
          Length = 45

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 1  MAHKLDLEEIASLDKAKLKA-TEMQKNTLMTKETTEQEK 38
          M++K D+ ++   D+ KLK     +KNTL+ +ET +QEK
Sbjct: 1  MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEK 39


>gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo
           sapiens]
          Length = 281

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 4   KLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
           K +++EI    K+KLK TEMQ KN   +KE  EQEK
Sbjct: 127 KSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEK 162


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.301    0.114    0.289 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,278,885
Number of Sequences: 37866
Number of extensions: 27156
Number of successful extensions: 107
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 15
length of query: 43
length of database: 18,247,518
effective HSP length: 17
effective length of query: 26
effective length of database: 17,603,796
effective search space: 457698696
effective search space used: 457698696
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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