Guide to the Human Genome
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Name: LOC100287135 Sequence: fasta or formatted (45aa) NCBI GI: 239742658
Description:

PREDICTED: hypothetical protein XP_002342605

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine            0.0          0           0
 D aspartate           4.4          2           1
 E glutamate          11.1          5           1
 F phenylalanine       4.4          2           1
 G glycine             2.2          1           1
 H histidine           0.0          0           0
 I isoleucine          6.7          3           1
 K lysine             20.0          9           2
 L leucine             6.7          3           2
 M methionine          4.4          2           1
 N asparagine          6.7          3           2
 P proline             4.4          2           1
 Q glutamine           8.9          4           2
 R arginine            2.2          1           1
 S serine              4.4          2           1
 T threonine           6.7          3           1
 V valine              2.2          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            4.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342605 
LOC100292284          1.000   PREDICTED: hypothetical protein 
LOC100290455          1.000   PREDICTED: hypothetical protein XP_002346748 
TMSB15B               0.551   thymosin beta15b 
TMSB15A               0.551   thymosin-like 8 
TMSB4X                0.362   thymosin, beta 4 
TMSL3                 0.362   thymosin-like 3 
TMSB10                0.348   thymosin, beta 10 
TMSB4Y                0.319   thymosin, beta 4, Y chromosome 
LOC100290275          0.174   PREDICTED: hypothetical protein XP_002347030 
LOC100289349          0.174   PREDICTED: hypothetical protein XP_002342871 
LOC100131433          0.145   PREDICTED: similar to thymosin, beta 10 
LOC100293539          0.145   PREDICTED: similar to ribosomal protein 10 
LOC100131433          0.145   PREDICTED: similar to thymosin, beta 10 
LOC100131433          0.145   PREDICTED: similar to thymosin, beta 10 
CREB3L2               0.072   cAMP responsive element binding protein 3-like 2 [Ho...
CREB3L1               0.058   cAMP responsive element binding protein 3-like 1 [Ho...
CREB3L3               0.058   cAMP responsive element binding protein 3-like 3 [Ho...
KRT1                  0.043   keratin 1 
KRT71                 0.043   keratin 71 
KRT4                  0.043   keratin 4 
KRT73                 0.029   keratin 73 
SMARCAD1              0.029   SWI/SNF-related, matrix-associated actin-dependent ...
KRT2                  0.029   keratin 2 
KRT72                 0.029   keratin 72 isoform 1 
KRT72                 0.029   keratin 72 isoform 2 
KRT72                 0.029   keratin 72 isoform 1 
KRT79                 0.014   keratin 6L 
SYCP1                 0.014   synaptonemal complex protein 1 
WDR87                 0.014   NYD-SP11 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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