Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 169172830

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169172830 PREDICTED: hypothetical protein LOC100128993 [Homo
sapiens]
         (143 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169173200 PREDICTED: hypothetical protein LOC100128993 [Homo ...   295   1e-80
gi|169172442 PREDICTED: hypothetical protein LOC100128993 [Homo ...   295   1e-80
gi|169172830 PREDICTED: hypothetical protein LOC100128993 [Homo ...   295   1e-80
gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]       32   0.18 
gi|24308237 phosphatidylinositol transfer protein, membrane-asso...    32   0.24 
gi|94721354 methylenetetrahydrofolate dehydrogenase 2 precursor ...    29   1.5  
gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens]        28   2.6  
gi|130502140 NEZHA isoform 2 [Homo sapiens]                            28   2.6  
gi|122937255 NEZHA isoform 1 [Homo sapiens]                            28   2.6  
gi|166795252 hypothetical protein LOC23359 [Homo sapiens]              27   4.4  
gi|4506583 replication protein A1, 70kDa [Homo sapiens]                27   5.8  
gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens]             27   5.8  
gi|239755739 PREDICTED: hypothetical protein [Homo sapiens]            26   9.9  
gi|239750250 PREDICTED: hypothetical protein [Homo sapiens]            26   9.9  
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]            26   9.9  
gi|134031945 SCO-spondin [Homo sapiens]                                26   9.9  

>gi|169173200 PREDICTED: hypothetical protein LOC100128993 [Homo
           sapiens]
          Length = 143

 Score =  295 bits (754), Expect = 1e-80
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 1   MSAALHQEWFMSLQEEKSGAASNPSHWGNLLSISLALAPGHTTQVSNESLILKNKRRLTT 60
           MSAALHQEWFMSLQEEKSGAASNPSHWGNLLSISLALAPGHTTQVSNESLILKNKRRLTT
Sbjct: 1   MSAALHQEWFMSLQEEKSGAASNPSHWGNLLSISLALAPGHTTQVSNESLILKNKRRLTT 60

Query: 61  DPKRKQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHR 120
           DPKRKQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHR
Sbjct: 61  DPKRKQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHR 120

Query: 121 SGSQGALVLVPTLPLSCLMATGE 143
           SGSQGALVLVPTLPLSCLMATGE
Sbjct: 121 SGSQGALVLVPTLPLSCLMATGE 143


>gi|169172442 PREDICTED: hypothetical protein LOC100128993 [Homo
           sapiens]
          Length = 143

 Score =  295 bits (754), Expect = 1e-80
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 1   MSAALHQEWFMSLQEEKSGAASNPSHWGNLLSISLALAPGHTTQVSNESLILKNKRRLTT 60
           MSAALHQEWFMSLQEEKSGAASNPSHWGNLLSISLALAPGHTTQVSNESLILKNKRRLTT
Sbjct: 1   MSAALHQEWFMSLQEEKSGAASNPSHWGNLLSISLALAPGHTTQVSNESLILKNKRRLTT 60

Query: 61  DPKRKQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHR 120
           DPKRKQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHR
Sbjct: 61  DPKRKQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHR 120

Query: 121 SGSQGALVLVPTLPLSCLMATGE 143
           SGSQGALVLVPTLPLSCLMATGE
Sbjct: 121 SGSQGALVLVPTLPLSCLMATGE 143


>gi|169172830 PREDICTED: hypothetical protein LOC100128993 [Homo
           sapiens]
          Length = 143

 Score =  295 bits (754), Expect = 1e-80
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 1   MSAALHQEWFMSLQEEKSGAASNPSHWGNLLSISLALAPGHTTQVSNESLILKNKRRLTT 60
           MSAALHQEWFMSLQEEKSGAASNPSHWGNLLSISLALAPGHTTQVSNESLILKNKRRLTT
Sbjct: 1   MSAALHQEWFMSLQEEKSGAASNPSHWGNLLSISLALAPGHTTQVSNESLILKNKRRLTT 60

Query: 61  DPKRKQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHR 120
           DPKRKQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHR
Sbjct: 61  DPKRKQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHR 120

Query: 121 SGSQGALVLVPTLPLSCLMATGE 143
           SGSQGALVLVPTLPLSCLMATGE
Sbjct: 121 SGSQGALVLVPTLPLSCLMATGE 143


>gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]
          Length = 981

 Score = 32.0 bits (71), Expect = 0.18
 Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 20/82 (24%)

Query: 29  NLLSISLALAPGHTTQVSNESLILKNKRRLTTDPKRKQEYNLRSWWATRGQRLTSIHTAL 88
           NLL+  L+ A G    +    L    +RRL   P        R W A+ G RL ++  AL
Sbjct: 598 NLLTQGLSCAWGAAVALGTLCLC---RRRLLDGP--------RGWDASPGPRLLAVAGAL 646

Query: 89  RLASCG---------YPGPGRV 101
            L + G         YPGPGRV
Sbjct: 647 GLLASGLQLAAALWLYPGPGRV 668


>gi|24308237 phosphatidylinositol transfer protein,
            membrane-associated 2 [Homo sapiens]
          Length = 1349

 Score = 31.6 bits (70), Expect = 0.24
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 34   SLALAPGHTTQVSNESLILKNKRRLTTDPKRKQEYNLRSWWATRGQRLTSIHTALRLASC 93
            +++L+P     V   +  L+ + +  TD        L+     R  R T+   ALR  S 
Sbjct: 1219 AISLSPMQIYIVGRPTKKLQQQCQFITDGYAAHLAQLKYSHRARPARNTATRMALRKGSF 1278

Query: 94   GYPGPGRVLQSR-------SRKGTGCSHRTSCHRSGSQG 125
            G PG G  L+SR       S + +G SHR    +S + G
Sbjct: 1279 GLPGQGDFLRSRNHLLRTISAQPSGPSHRHERTQSQADG 1317


>gi|94721354 methylenetetrahydrofolate dehydrogenase 2 precursor
          [Homo sapiens]
          Length = 350

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 12 SLQEEKSGAASNPSHWGNLLSISLALAPGHTTQVSNESLILKNKRRLTTDPKRKQEYNLR 71
          SL    +     P+H     S SL L P H   V NE++++   R+L    K++    + 
Sbjct: 5  SLMSALAARLLQPAH-----SCSLRLRPFHLAAVRNEAVVISG-RKLAQQIKQEVRQEVE 58

Query: 72 SWWATRGQR 80
           W A+  +R
Sbjct: 59 EWVASGNKR 67


>gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens]
          Length = 358

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 83  SIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHRSGSQGA 126
           S H A  L + G PGPG  L     KG G +H      SG  GA
Sbjct: 234 SPHPAPALGAAGLPGPGSAL-----KGLGAAH-PDLRASGGSGA 271


>gi|130502140 NEZHA isoform 2 [Homo sapiens]
          Length = 1249

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 65   KQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHRSGSQ 124
            +QEY  R+    + + +  +   LR  + G  GPGR  +  +R  +GC   ++  RS ++
Sbjct: 979  RQEYERRA----QLKLMDDLDKVLRPRAAGSGGPGRGGRRATRPRSGCCDDSALARSPAR 1034

Query: 125  GAL 127
            G L
Sbjct: 1035 GLL 1037


>gi|122937255 NEZHA isoform 1 [Homo sapiens]
          Length = 1276

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 65   KQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHRSGSQ 124
            +QEY  R+    + + +  +   LR  + G  GPGR  +  +R  +GC   ++  RS ++
Sbjct: 1006 RQEYERRA----QLKLMDDLDKVLRPRAAGSGGPGRGGRRATRPRSGCCDDSALARSPAR 1061

Query: 125  GAL 127
            G L
Sbjct: 1062 GLL 1064


>gi|166795252 hypothetical protein LOC23359 [Homo sapiens]
          Length = 539

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 8/44 (18%)

Query: 96  PGPGRVLQSRS--------RKGTGCSHRTSCHRSGSQGALVLVP 131
           PGPGRV +S S          G   SHR SC +    G    VP
Sbjct: 389 PGPGRVSRSTSDPTLCTSSMAGDASSHRPSCSQDLEAGLSEAVP 432


>gi|4506583 replication protein A1, 70kDa [Homo sapiens]
          Length = 616

 Score = 26.9 bits (58), Expect = 5.8
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 35  LALAPGHTTQVSNESLILKNKRRLTTDPKRKQEYNLRSWWATRGQRLTSI 84
           LA+     +     SL + +   +  +P   + Y LR W+   GQ L  +
Sbjct: 376 LAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGV 425


>gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens]
          Length = 1316

 Score = 26.9 bits (58), Expect = 5.8
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 95   YPGPGRVLQSRSRKGTG-CSHRTSCHRSG 122
            +PG G  L    R+  G CSH  S HRSG
Sbjct: 999  HPGHGDRLSPGERRSLGRCSHHHSRHRSG 1027


>gi|239755739 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 202

 Score = 26.2 bits (56), Expect = 9.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 96  PGPGRV--LQSRSRKGTGCSHRTSCHRSGSQGA 126
           PGPGRV   Q+R+R+G G   R +    G + A
Sbjct: 47  PGPGRVRAAQARARRGGGARERPAEGARGPRAA 79


>gi|239750250 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 202

 Score = 26.2 bits (56), Expect = 9.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 96  PGPGRV--LQSRSRKGTGCSHRTSCHRSGSQGA 126
           PGPGRV   Q+R+R+G G   R +    G + A
Sbjct: 47  PGPGRVRAAQARARRGGGARERPAEGARGPRAA 79


>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 221

 Score = 26.2 bits (56), Expect = 9.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 96  PGPGRV--LQSRSRKGTGCSHRTSCHRSGSQGA 126
           PGPGRV   Q+R+R+G G   R +    G + A
Sbjct: 47  PGPGRVRAAQARARRGGGARERPAEGARGPRAA 79


>gi|134031945 SCO-spondin [Homo sapiens]
          Length = 5147

 Score = 26.2 bits (56), Expect = 9.9
 Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 92   SCGYPGPGRVLQSRSRKGTGCSHRTSCHRSGSQGALVLVPTLPLSCLMAT 141
            SCG  G     QSR R  T  S    C    SQ      P+ P  CL  T
Sbjct: 4174 SCGPRGQ----QSRFRSSTSGSWAPECREEQSQSQPCPQPSCPPLCLQGT 4219


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.127    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,148,193
Number of Sequences: 37866
Number of extensions: 259880
Number of successful extensions: 707
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 17
length of query: 143
length of database: 18,247,518
effective HSP length: 92
effective length of query: 51
effective length of database: 14,763,846
effective search space: 752956146
effective search space used: 752956146
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press