Guide to the Human Genome
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Name: LOC100130663 Sequence: fasta or formatted (148aa) NCBI GI: 169168160
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {148aa} PREDICTED: hypothetical protein
alt mRNA {148aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         18           2
 C cysteine            4.1          6           1
 D aspartate           0.7          1           1
 E glutamate           1.4          2           1
 F phenylalanine       4.1          6           2
 G glycine            10.1         15           5
 H histidine           2.0          3           1
 I isoleucine          0.0          0           0
 K lysine              2.7          4           1
 L leucine             6.8         10           2
 M methionine          0.7          1           1
 N asparagine          2.0          3           1
 P proline            14.9         22           2
 Q glutamine           6.1          9           1
 R arginine           10.1         15           1
 S serine             11.5         17           2
 T threonine           8.1         12           2
 V valine              2.0          3           1
 W tryptophan          0.7          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130663          1.000   PREDICTED: hypothetical protein 
LOC100130663          1.000   PREDICTED: hypothetical protein 
LOC100290436          0.052   PREDICTED: hypothetical protein XP_002347616 
LOC100287267          0.052   PREDICTED: hypothetical protein XP_002343446 
LOC100130716          0.049   PREDICTED: similar to mucin 11 
FLJ22184              0.049   PREDICTED: hypothetical protein FLJ22184 
LOC100130716          0.049   PREDICTED: similar to Mucin-12 
FLJ22184              0.049   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.049   PREDICTED: hypothetical protein LOC80164 
MUC12                 0.045   PREDICTED: mucin 12 
ZNF469                0.042   zinc finger protein 469 
BRSK1                 0.042   BR serine/threonine kinase 1 
BHLHE41               0.042   basic helix-loop-helix domain containing, class B, 3...
MUC12                 0.038   PREDICTED: mucin 12, cell surface associated 
ACCN1                 0.038   amiloride-sensitive cation channel 1, neuronal isofo...
SPTY2D1               0.038   SPT2, Suppressor of Ty, domain containing 1 
BAT2                  0.035   HLA-B associated transcript-2 
SOX12                 0.035   SRY (sex determining region Y)-box 12 
LOC100291533          0.035   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.035   PREDICTED: hypothetical protein XP_002342946 
LOC100291071          0.035   PREDICTED: hypothetical protein XP_002346951 
LOC100287198          0.035   PREDICTED: hypothetical protein XP_002342815 
LOC100287198          0.035   PREDICTED: hypothetical protein 
RBM15B                0.031   RNA binding motif protein 15B 
HOXD11                0.031   homeobox D11 
LOC100131098          0.031   PREDICTED: hypothetical protein 
LOC100131098          0.031   PREDICTED: hypothetical protein 
C2orf71               0.031   hypothetical protein LOC388939 
LOC100133142          0.028   PREDICTED: similar to zinc finger protein 208 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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