Guide to the Human Genome
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Name: LOC100130097 Sequence: fasta or formatted (609aa) NCBI GI: 169162091
Description:

PREDICTED: similar to Kinesin-Like Protein family member (klp-6)

Not currently referenced in the text

Other entries for this name:
alt prot {372aa} PREDICTED: hypothetical protein
alt prot {383aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         39           2
 C cysteine            2.6         16           2
 D aspartate           4.3         26           3
 E glutamate           7.9         48           3
 F phenylalanine       3.3         20           1
 G glycine             6.6         40           2
 H histidine           1.8         11           1
 I isoleucine          4.1         25           1
 K lysine              4.3         26           2
 L leucine            13.3         81           3
 M methionine          2.3         14           1
 N asparagine          2.8         17           1
 P proline             6.7         41           2
 Q glutamine           5.4         33           2
 R arginine            4.8         29           2
 S serine              8.7         53           3
 T threonine           5.7         35           2
 V valine              5.4         33           2
 W tryptophan          1.6         10           1
 Y tyrosine            2.0         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Kinesin-Like Protein family m... 
LOC100130097          0.596   PREDICTED: hypothetical protein 
LOC100130097          0.574   PREDICTED: hypothetical protein 
LOC100131773          0.146   PREDICTED: similar to hCG1782152 
LOC100131773          0.146   PREDICTED: similar to hCG1782152 
KIF13B                0.016   kinesin family member 13B 
ELL2                  0.009   elongation factor, RNA polymerase II, 2 
KIF13A                0.008   kinesin family member 13A isoform d 
KIF13A                0.008   kinesin family member 13A isoform c 
KIF13A                0.008   kinesin family member 13A isoform b 
KIF13A                0.008   kinesin family member 13A isoform a 
BRPF3                 0.007   bromodomain and PHD finger containing, 3 
LOC100134663          0.007   PREDICTED: hypothetical protein, partial 
CASZ1                 0.007   castor homolog 1, zinc finger isoform a 
CASZ1                 0.007   castor homolog 1, zinc finger isoform b 
MAP3K6                0.007   mitogen-activated protein kinase kinase kinase 6 [Ho...
UACA                  0.007   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.007   uveal autoantigen with coiled-coil domains and ankyr...
E2F7                  0.006   E2F transcription factor 7 
TLN2                  0.006   talin 2 
CD7                   0.006   CD7 antigen precursor 
TRIM75                0.006   tripartite motif-containing 75 
MUC2                  0.006   mucin 2 precursor 
GPC1                  0.006   glypican 1 precursor 
WNK2                  0.006   WNK lysine deficient protein kinase 2 
CCDC88C               0.006   DVL-binding protein DAPLE 
KIAA0090              0.006   hypothetical protein LOC23065 
IGF2BP1               0.005   insulin-like growth factor 2 mRNA binding protein 1...
IGF2BP1               0.005   insulin-like growth factor 2 mRNA binding protein 1 ...
LAMA3                 0.005   laminin alpha 3 subunit isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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