Guide to the Human Genome
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Name: RBM27 Sequence: fasta or formatted (1060aa) NCBI GI: 168229174
Description:

RNA binding motif protein 27

Referenced in:

RNA-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         46           3
 C cysteine            0.8          8           1
 D aspartate           4.4         47           4
 E glutamate           8.0         85           4
 F phenylalanine       2.1         22           2
 G glycine             6.6         70           2
 H histidine           2.6         28           3
 I isoleucine          3.2         34           1
 K lysine              7.6         81           3
 L leucine             9.1         96           3
 M methionine          1.9         20           2
 N asparagine          4.5         48           3
 P proline             9.5        101           6
 Q glutamine           5.7         60           4
 R arginine            6.9         73           2
 S serine              9.6        102           3
 T threonine           4.7         50           2
 V valine              5.3         56           2
 W tryptophan          0.8          8           1
 Y tyrosine            2.4         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein 27 
RBM26                 0.350   RNA binding motif protein 26 
BRD4                  0.025   bromodomain-containing protein 4 isoform long 
FMN2                  0.023   formin 2 
SF3A2                 0.022   splicing factor 3a, subunit 2 
SF3B4                 0.019   splicing factor 3b, subunit 4 
SFPQ                  0.019   splicing factor proline/glutamine rich (polypyrimidin...
SMARCA4               0.019   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.019   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.019   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.019   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.019   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.019   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.019   SWI/SNF-related matrix-associated actin-dependent re...
TAF4                  0.019   TBP-associated factor 4 
ENAH                  0.018   enabled homolog isoform a 
ENAH                  0.018   enabled homolog isoform b 
FLJ22184              0.018   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.018   PREDICTED: hypothetical protein LOC80164 
SETD1B                0.018   SET domain containing 1B 
CROP                  0.018   cisplatin resistance-associated overexpressed protei...
CROP                  0.018   cisplatin resistance-associated overexpressed protei...
SMARCA2               0.017   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.017   SWI/SNF-related matrix-associated actin-dependent re...
SFRS15                0.017   splicing factor, arginine/serine-rich 15 isoform 3 ...
DIAPH1                0.017   diaphanous 1 isoform 2 
DIAPH1                0.017   diaphanous 1 isoform 1 
WIPF3                 0.017   WAS/WASL interacting protein family, member 3 [Homo...
DHX8                  0.017   DEAH (Asp-Glu-Ala-His) box polypeptide 8 
TCERG1                0.017   transcription elongation regulator 1 isoform 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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