Search of human proteins with 110624763

Search of human proteins with 110624763

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|110624763 POU domain, class 3, transcription factor 4 [Homo
sapiens]
         (361 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|110624763 POU domain, class 3, transcription factor 4 [Homo s...   748   0.0  
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa...   391   e-109
gi|5453936 POU class 3 homeobox 3 [Homo sapiens]                      377   e-105
gi|110624765 POU domain, class 3, transcription factor 1 [Homo s...   310   1e-84
gi|42476164 POU class 2 homeobox 1 [Homo sapiens]                     202   3e-52
gi|148664218 POU transcription factor [Homo sapiens]                  199   2e-51
gi|4505959 POU domain, class 2, transcription factor 2 [Homo sap...   195   5e-50
gi|42560248 POU domain, class 5, transcription factor 1 isoform ...   190   2e-48
gi|116235491 POU domain, class 5, transcription factor 1 isoform...   186   3e-47
gi|227430410 POU class 5 homeobox 1B [Homo sapiens]                   182   3e-46
gi|4505955 pituitary specific transcription factor 1 isoform alp...   180   2e-45
gi|170650730 pituitary specific transcription factor 1 isoform b...   179   4e-45
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s...   158   6e-39
gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]     151   8e-37
gi|4505965 POU class 4 homeobox 3 [Homo sapiens]                      148   6e-36
gi|23463326 POU domain class 5, transcription factor 2 [Homo sap...   144   2e-34
gi|223890225 POU class 6 homeobox 1 [Homo sapiens]                    132   5e-31
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s...   105   5e-23
gi|11641283 LIM homeobox protein 5 [Homo sapiens]                      51   1e-06
gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens]            47   3e-05
gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens]             47   3e-05
gi|30410785 LIM homeobox protein 1 [Homo sapiens]                      47   3e-05
gi|157743259 H6 family homeobox 3 [Homo sapiens]                       44   2e-04
gi|134284361 LIM homeobox protein 6 isoform 2 [Homo sapiens]           44   2e-04
gi|134284359 LIM homeobox protein 6 isoform 1 [Homo sapiens]           44   2e-04
gi|15375314 LIM homeobox protein 4 [Homo sapiens]                      44   2e-04
gi|116805350 homeo box (H6 family) 1 [Homo sapiens]                    44   3e-04
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]      43   4e-04
gi|194353946 homeobox D12 [Homo sapiens]                               43   5e-04
gi|7110735 ventral anterior homeobox 2 [Homo sapiens]                  42   9e-04

>gi|110624763 POU domain, class 3, transcription factor 4 [Homo
           sapiens]
          Length = 361

 Score =  748 bits (1930), Expect = 0.0
 Identities = 361/361 (100%), Positives = 361/361 (100%)

Query: 1   MATAASNPYSILSSTSLVHADSAGMQQGSPFRNPQKLLQSDYLQGVPSNGHPLGHHWVTS 60
           MATAASNPYSILSSTSLVHADSAGMQQGSPFRNPQKLLQSDYLQGVPSNGHPLGHHWVTS
Sbjct: 1   MATAASNPYSILSSTSLVHADSAGMQQGSPFRNPQKLLQSDYLQGVPSNGHPLGHHWVTS 60

Query: 61  LSDGGPWSSTLATSPLDQQDVKPGREDLQLGAIIHHRSPHVAHHSPHTNHPNAWGASPAP 120
           LSDGGPWSSTLATSPLDQQDVKPGREDLQLGAIIHHRSPHVAHHSPHTNHPNAWGASPAP
Sbjct: 61  LSDGGPWSSTLATSPLDQQDVKPGREDLQLGAIIHHRSPHVAHHSPHTNHPNAWGASPAP 120

Query: 121 NPSITSSGQPLNVYSQPGFTVSGMLEHGGLTPPPAAASAQSLHPVLREPPDHGELGSHHC 180
           NPSITSSGQPLNVYSQPGFTVSGMLEHGGLTPPPAAASAQSLHPVLREPPDHGELGSHHC
Sbjct: 121 NPSITSSGQPLNVYSQPGFTVSGMLEHGGLTPPPAAASAQSLHPVLREPPDHGELGSHHC 180

Query: 181 QDHSDEETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEGLQL 240
           QDHSDEETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEGLQL
Sbjct: 181 QDHSDEETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEGLQL 240

Query: 241 SFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGVLETHFLKC 300
           SFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGVLETHFLKC
Sbjct: 241 SFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGVLETHFLKC 300

Query: 301 PKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGDQQPHEVYSHTVKTDTSCHD 360
           PKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGDQQPHEVYSHTVKTDTSCHD
Sbjct: 301 PKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGDQQPHEVYSHTVKTDTSCHD 360

Query: 361 L 361
           L
Sbjct: 361 L 361


>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
           sapiens]
          Length = 443

 Score =  391 bits (1004), Expect = e-109
 Identities = 246/445 (55%), Positives = 273/445 (61%), Gaps = 96/445 (21%)

Query: 1   MATAASNPYSIL-SSTSLVHADS-AGMQQGSP-FRNPQKLLQSDYLQGVPSNGHPLGH-- 55
           MATAASN YS+L SS S+VHA+   GMQQG+  +R  Q L+Q DY   + SNGHPL H  
Sbjct: 1   MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREAQSLVQGDY-GALQSNGHPLSHAH 59

Query: 56  HWVTSLS----------------------DGGPWSSTLATSPLDQQDVKP-------GRE 86
            W+T+LS                      DG PWS    TSPL Q D+KP       GR 
Sbjct: 60  QWITALSHGGGGGGGGGGGGGGGGGGGGGDGSPWS----TSPLGQPDIKPSVVVQQGGRG 115

Query: 87  DLQLGAII------------------------HHRSPHVAHHSP-HTNHPNAWGASPAPN 121
           D   G                             R PH+ HH+  H   P AW ++ A  
Sbjct: 116 DELHGPGALQQQHQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAA 175

Query: 122 ---PSITSSGQPLNVYSQPGFTVSGMLEHGGLTPPPAAASAQSL---------------- 162
              PS+ +S   L +YSQP FTV+GML  GG    PA      L                
Sbjct: 176 HLPPSMGASNGGL-LYSQPSFTVNGMLGAGG---QPAGLHHHGLRDAHDEPHHADHHPHP 231

Query: 163 --HPVLREPPDH------GELGSHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQAD 214
             HP  + PP        G  G+HH   HSDE+TPTSD+LEQFAKQFKQRRIKLGFTQAD
Sbjct: 232 HSHPHQQPPPPPPPQGPPGHPGAHH-DPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQAD 290

Query: 215 VGLALGTLYGNVFSQTTICRFEGLQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAA 274
           VGLALGTLYGNVFSQTTICRFE LQLSFKNMCKLKPLLNKWLEEADSS+GSPTSIDKIAA
Sbjct: 291 VGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGSPTSIDKIAA 350

Query: 275 QGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEK 334
           QGRKRKKRTSIEVSVKG LE+HFLKCPKP+AQEI+SLADSLQLEKEVVRVWFCNRRQKEK
Sbjct: 351 QGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEK 410

Query: 335 RMTPPGDQQPHEVYSHTVKTDTSCH 359
           RMTPPG   P     +    DT  H
Sbjct: 411 RMTPPGGTLPGAEDVYGGSRDTPPH 435


>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
          Length = 500

 Score =  377 bits (968), Expect = e-105
 Identities = 253/494 (51%), Positives = 283/494 (57%), Gaps = 144/494 (29%)

Query: 1   MATAASNPY----SILSSTSLVHADSAG----------------------MQQGSP---- 30
           MATAASNPY    S+L++ S+VH+D+AG                      MQ GS     
Sbjct: 1   MATAASNPYLPGNSLLAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTS 60

Query: 31  --FRNPQ---KLLQSDYLQGV---PSNGHPLGH--HWVTSLSDGG--------------- 65
             +R      K++QSD++QG     + GH L H   WVT+L                   
Sbjct: 61  GAYRGDPSSVKMVQSDFMQGAMAASNGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEASS 120

Query: 66  PWSST---LATSPLDQQDVKP------------GREDLQLGAIIHHRSP-HVAHHSP--H 107
           PWS +   +A SP       P            GR+DL  G  +HHR P H+    P  H
Sbjct: 121 PWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHHRGPPHLGPPPPPPH 180

Query: 108 TNHPNAWGASPAPN------------PSITSSGQPLN---VYSQPG-FTVSGMLEHGGLT 151
             HP  WGA+ A              PS+    QP     +YSQPG FTV+GML      
Sbjct: 181 QGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYSQPGGFTVNGMLS----A 236

Query: 152 PPP-------AAASAQSL-HPVL-----------------------------REPPDHGE 174
           PP        A   AQSL HP L                             + PP HG 
Sbjct: 237 PPGPGGGGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHHHHAHPHPPHPHHAQGPPHHGG 296

Query: 175 --------LGSHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNV 226
                   L SH    HSDE+TPTSD+LEQFAKQFKQRRIKLGFTQADVGLALGTLYGNV
Sbjct: 297 GGGGAGPGLNSH--DPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNV 354

Query: 227 FSQTTICRFEGLQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIE 286
           FSQTTICRFE LQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIE
Sbjct: 355 FSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIE 414

Query: 287 VSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGDQQ--P 344
           VSVKG LE+HFLKCPKP+AQEI++LADSLQLEKEVVRVWFCNRRQKEKRMTPPG QQ  P
Sbjct: 415 VSVKGALESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTP 474

Query: 345 HEVYSH--TVKTDT 356
            +VYS   TV  DT
Sbjct: 475 DDVYSQVGTVSADT 488


>gi|110624765 POU domain, class 3, transcription factor 1 [Homo
           sapiens]
          Length = 451

 Score =  310 bits (795), Expect = 1e-84
 Identities = 191/380 (50%), Positives = 223/380 (58%), Gaps = 60/380 (15%)

Query: 17  LVHADSAG----------MQQGSPFRNPQKLLQSDYLQGVPSNGHPLG---HHWV-TSLS 62
           L+H D+A           +  G+ +R  QKL+  ++L      GHP+G     W+ T   
Sbjct: 22  LMHPDAAAAAAAAAAAERLHAGAAYREVQKLMHHEWLGA--GAGHPVGLAHPQWLPTGGG 79

Query: 63  DGGPWSSTLATSPLDQQDVKPGREDLQLGA------IIHHRSPHV--AHHSPHTNHPNAW 114
            GG W+               GR D   G       ++H  + H   A     T H    
Sbjct: 80  GGGDWAGGPHLEHGKAGGGGTGRADDGGGGGGFHARLVHQGAAHAGAAWAQGSTAHHLGP 139

Query: 115 GASPAPNPSITSSGQPLNVYSQPGFT------VSGMLEHGGLTPPPAAASA--QSLHPVL 166
             SP+P  S     QPL +Y+Q  +       ++GML  GG    P    A  +  H   
Sbjct: 140 AMSPSPGASGGHQPQPLGLYAQAAYPGGGGGGLAGMLAAGGGGAGPGLHHALHEDGHEAQ 199

Query: 167 REPPDHGELGSH-----HCQ-----------------------DHSDEETPTSDELEQFA 198
            EP     LG+H     H                         +HSDE+ P+SD+LEQFA
Sbjct: 200 LEPSPPPHLGAHGHAHGHAHAGGLHAAAAHLHPGAGGGGSSVGEHSDEDAPSSDDLEQFA 259

Query: 199 KQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEGLQLSFKNMCKLKPLLNKWLEE 258
           KQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFE LQLSFKNMCKLKPLLNKWLEE
Sbjct: 260 KQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEE 319

Query: 259 ADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLE 318
            DSS+GSPT++DKIAAQGRKRKKRTSIEV VKG LE+HFLKCPKP+A EI+ LADSLQLE
Sbjct: 320 TDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLE 379

Query: 319 KEVVRVWFCNRRQKEKRMTP 338
           KEVVRVWFCNRRQKEKRMTP
Sbjct: 380 KEVVRVWFCNRRQKEKRMTP 399


>gi|42476164 POU class 2 homeobox 1 [Homo sapiens]
          Length = 743

 Score =  202 bits (515), Expect = 3e-52
 Identities = 103/161 (63%), Positives = 123/161 (76%), Gaps = 7/161 (4%)

Query: 186 EETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEGLQLSFKNM 245
           EE    +ELEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFE L LSFKNM
Sbjct: 280 EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 339

Query: 246 CKLKPLLNKWLEEA-----DSSTGSPTSIDKIAAQG--RKRKKRTSIEVSVKGVLETHFL 298
           CKLKPLL KWL +A     DSS  SP++++    +G  R+RKKRTSIE +++  LE  FL
Sbjct: 340 CKLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFL 399

Query: 299 KCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRMTPP 339
           +  KP ++EI+ +AD L +EKEV+RVWFCNRRQKEKR+ PP
Sbjct: 400 ENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRINPP 440


>gi|148664218 POU transcription factor [Homo sapiens]
          Length = 436

 Score =  199 bits (507), Expect = 2e-51
 Identities = 118/232 (50%), Positives = 141/232 (60%), Gaps = 16/232 (6%)

Query: 124 ITSSGQPLNVYSQPGFTVSGMLEHGGLTPP--PAAASAQSLHPVLR--------EPPDHG 173
           + S  QP     QP        + G L P   P  AS    HP L         E   H 
Sbjct: 111 LLSQTQPGQQGLQPNLLPFPQQQSGLLLPQTGPGLASQAFGHPGLPGSSLEPHLEASQHL 170

Query: 174 ELGSHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTIC 233
            +  H       +E    +ELE+FAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI 
Sbjct: 171 PVPKHLPSSGGADEPSDLEELEKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTIS 230

Query: 234 RFEGLQLSFKNMCKLKPLLNKWLEEADS-----STGSPTSIDKIA-AQGRKRKKRTSIEV 287
           RFE L LSFKNMCKLKPLL KWL +A+S     S  +P+S   ++   GRKRKKRTSIE 
Sbjct: 231 RFEALNLSFKNMCKLKPLLEKWLNDAESSPSDPSVSTPSSYPSLSEVFGRKRKKRTSIET 290

Query: 288 SVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRMTPP 339
           +++  LE  F   PKP+++EIS +A+ L +EKEVVRVWFCNRRQKEKR+  P
Sbjct: 291 NIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRINCP 342


>gi|4505959 POU domain, class 2, transcription factor 2 [Homo
           sapiens]
          Length = 463

 Score =  195 bits (496), Expect = 5e-50
 Identities = 114/220 (51%), Positives = 132/220 (60%), Gaps = 28/220 (12%)

Query: 135 SQPGFTVSGML------EHGGLTPPPAAASAQSLHPVLREPPDHGELGSHHCQDHSDEET 188
           SQPG   +  L        G L      A   +  P   EPP H             EE 
Sbjct: 134 SQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQPPKCLEPPSH------------PEEP 181

Query: 189 PTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEGLQLSFKNMCKL 248
              +ELEQFA+ FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFE L LSFKNMCKL
Sbjct: 182 SDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKL 241

Query: 249 KPLLNKWLEEA-----DSSTGSPTSIDKIA-----AQGRKRKKRTSIEVSVKGVLETHFL 298
           KPLL KWL +A     DSS  SP  +   +       GR+RKKRTSIE +V+  LE  FL
Sbjct: 242 KPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFALEKSFL 301

Query: 299 KCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRMTP 338
              KP ++EI  +A+ L +EKEV+RVWFCNRRQKEKR+ P
Sbjct: 302 ANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINP 341


>gi|42560248 POU domain, class 5, transcription factor 1 isoform 1
           [Homo sapiens]
          Length = 360

 Score =  190 bits (482), Expect = 2e-48
 Identities = 114/234 (48%), Positives = 135/234 (57%), Gaps = 16/234 (6%)

Query: 114 WGASPAPNPSITSSGQPLNVYSQPGFTVSGMLEHGGL-TPPP---AAASAQSLHPVLREP 169
           WG  P P P     G     Y  P   V G++  GGL T  P   A    +S        
Sbjct: 58  WGIPPCPPPYEFCGGM---AYCGPQVGV-GLVPQGGLETSQPEGEAGVGVESNSDGASPE 113

Query: 170 PDHGELGSHHCQDHSDEETPTSD--------ELEQFAKQFKQRRIKLGFTQADVGLALGT 221
           P     G+   +    E+ P           ELEQFAK  KQ+RI LG+TQADVGL LG 
Sbjct: 114 PCTVTPGAVKLEKEKLEQNPEESQDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGV 173

Query: 222 LYGNVFSQTTICRFEGLQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKK 281
           L+G VFSQTTICRFE LQLSFKNMCKL+PLL KW+EEAD++               +++K
Sbjct: 174 LFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRK 233

Query: 282 RTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKR 335
           RTSIE  V+G LE  FL+CPKP  Q+IS +A  L LEK+VVRVWFCNRRQK KR
Sbjct: 234 RTSIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKR 287


>gi|116235491 POU domain, class 5, transcription factor 1 isoform 2
           [Homo sapiens]
          Length = 265

 Score =  186 bits (472), Expect = 3e-47
 Identities = 93/143 (65%), Positives = 108/143 (75%)

Query: 193 ELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEGLQLSFKNMCKLKPLL 252
           ELEQFAK  KQ+RI LG+TQADVGL LG L+G VFSQTTICRFE LQLSFKNMCKL+PLL
Sbjct: 50  ELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLL 109

Query: 253 NKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLA 312
            KW+EEAD++               +++KRTSIE  V+G LE  FL+CPKP  Q+IS +A
Sbjct: 110 QKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPKPTLQQISHIA 169

Query: 313 DSLQLEKEVVRVWFCNRRQKEKR 335
             L LEK+VVRVWFCNRRQK KR
Sbjct: 170 QQLGLEKDVVRVWFCNRRQKGKR 192


>gi|227430410 POU class 5 homeobox 1B [Homo sapiens]
          Length = 359

 Score =  182 bits (463), Expect = 3e-46
 Identities = 113/234 (48%), Positives = 133/234 (56%), Gaps = 17/234 (7%)

Query: 114 WGASPAPNPSITSSGQPLNVYSQPGFTVSGMLEHGGL-TPPP---AAASAQSLHPVLREP 169
           WG  P P P     G     Y  P   V G++  GGL T  P   A    +S        
Sbjct: 58  WGIPPCPPPYELCGGM---AYCGPQVGV-GLVPQGGLETSQPESEAGVGVESNSNGASPE 113

Query: 170 PDHGELGSHHCQDHSDEETPTSD--------ELEQFAKQFKQRRIKLGFTQADVGLALGT 221
           P     G+   +    E+ P           ELEQFAK  KQ+RI LG+TQADVGL LG 
Sbjct: 114 PCTVPPGAVKLEKEKLEQNPEKSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILGV 173

Query: 222 LYGNVFSQTTICRFEGLQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKK 281
           L+G VFSQ TICRFE LQLSFKNMCKL+PLL KW+EEAD++               +++K
Sbjct: 174 LFGKVFSQKTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLMQARKRK 233

Query: 282 RTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKR 335
           RTSIE  V+G LE  FL+CPKP  Q IS +A  L LEK+VVRVWFCNRRQK KR
Sbjct: 234 RTSIENRVRGNLENLFLQCPKPTLQ-ISHIAQQLGLEKDVVRVWFCNRRQKGKR 286


>gi|4505955 pituitary specific transcription factor 1 isoform alpha
           [Homo sapiens]
          Length = 291

 Score =  180 bits (456), Expect = 2e-45
 Identities = 116/269 (43%), Positives = 150/269 (55%), Gaps = 51/269 (18%)

Query: 99  PHVAHHS-----PHTNHPNAWGASPAPNPSITSSGQPLNVYSQPGFTVSGMLEHGGLTPP 153
           P + HHS     P +NH        A N   T++G     YS P         H G  P 
Sbjct: 24  PLIMHHSAAECLPVSNH--------ATNVMSTATGLH---YSVPSC-------HYGNQPS 65

Query: 154 PAAASAQSLHPVLREPPDHG--------------------------ELGSHHCQDHSDEE 187
                A SL P L + PDH                              S   ++  D +
Sbjct: 66  TYGVMAGSLTPCLYKFPDHTLSHGFPPIHQPLLAEDPTAADFKQELRRKSKLVEEPIDMD 125

Query: 188 TPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEGLQLSFKNMCK 247
           +P   ELE+FA +FK RRIKLG+TQ +VG AL  ++G+ FSQTTICRFE LQLSFKN CK
Sbjct: 126 SPEIRELEKFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACK 185

Query: 248 LKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQE 307
           LK +L+KWLEEA+   G+  + +K+ A  RKRK+RT+I ++ K  LE HF +  KP++QE
Sbjct: 186 LKAILSKWLEEAE-QVGALYN-EKVGANERKRKRRTTISIAAKDALERHFGEQNKPSSQE 243

Query: 308 ISSLADSLQLEKEVVRVWFCNRRQKEKRM 336
           I  +A+ L LEKEVVRVWFCNRRQ+EKR+
Sbjct: 244 IMRMAEELNLEKEVVRVWFCNRRQREKRV 272


>gi|170650730 pituitary specific transcription factor 1 isoform beta
           [Homo sapiens]
          Length = 317

 Score =  179 bits (453), Expect = 4e-45
 Identities = 95/179 (53%), Positives = 126/179 (70%), Gaps = 8/179 (4%)

Query: 164 PVLREPPDHGELG------SHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQADVGL 217
           P+L E P   +        S   ++  D ++P   ELE+FA +FK RRIKLG+TQ +VG 
Sbjct: 122 PLLAEDPTAADFKQELRRKSKLVEEPIDMDSPEIRELEKFANEFKVRRIKLGYTQTNVGE 181

Query: 218 ALGTLYGNVFSQTTICRFEGLQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGR 277
           AL  ++G+ FSQTTICRFE LQLSFKN CKLK +L+KWLEEA+   G+  + +K+ A  R
Sbjct: 182 ALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAE-QVGALYN-EKVGANER 239

Query: 278 KRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRM 336
           KRK+RT+I ++ K  LE HF +  KP++QEI  +A+ L LEKEVVRVWFCNRRQ+EKR+
Sbjct: 240 KRKRRTTISIAAKDALERHFGEQNKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 298


>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
           sapiens]
          Length = 419

 Score =  158 bits (400), Expect = 6e-39
 Identities = 104/245 (42%), Positives = 137/245 (55%), Gaps = 23/245 (9%)

Query: 96  HRSPHVAHHSPHTNHPNAWGASPAPNPSITSSGQPLNVYSQPGFTVSGMLEHGGLTPPPA 155
           H  PH+ H   H +HP A  A   P      SG P      PG  V+    HG      A
Sbjct: 188 HPHPHM-HSLGHLSHPAAAAAMNMP------SGLP-----HPGL-VAAAAHHGAAAAAAA 234

Query: 156 AASAQSLHPVLREPPDHGELGSHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQADV 215
           AA+ Q    V         +G+       D +T    ELE FA++FKQRRIKLG TQADV
Sbjct: 235 AAAGQ----VAAASAAAAVVGAAGLASICDSDTDPR-ELEAFAERFKQRRIKLGVTQADV 289

Query: 216 GLALGTL----YGNVFSQTTICRFEGLQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDK 271
           G AL  L     G++ SQ+TICRFE L LS  NM  LKP+L  WLEEA+ +     +  +
Sbjct: 290 GSALANLKIPGVGSL-SQSTICRFESLTLSHNNMIALKPILQAWLEEAEGAQREKMNKPE 348

Query: 272 IAAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQ 331
           +   G K++KRTSI    K  LE +F   P+P++++I+++A+ L L+K VVRVWFCN+RQ
Sbjct: 349 LFNGGEKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQ 408

Query: 332 KEKRM 336
           K+KRM
Sbjct: 409 KQKRM 413


>gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]
          Length = 409

 Score =  151 bits (382), Expect = 8e-37
 Identities = 103/274 (37%), Positives = 138/274 (50%), Gaps = 31/274 (11%)

Query: 73  TSPLDQQDVKPGREDLQLGAIIHHRSPHVAHHSPHTNHPNAWGASPAPNPSITSSGQPLN 132
           TS      V         G   HH   H  HH PH                    G+ L 
Sbjct: 151 TSAASSSSVPISHPSALAGTHHHHHHHHHHHHQPHQ----------------ALEGELLE 194

Query: 133 VYSQPGFTVSGMLEHGG--LTPPPAAASAQSLHPV----LREPPDHGELGSHHCQDHSDE 186
             S PG  +  M    G  ++ P  A    +++P+    L     HG      C    D 
Sbjct: 195 HLS-PGLALGAMAGPDGAVVSTPAHAPHMATMNPMHQAALSMAHAHGLPSHMGCMSDVDA 253

Query: 187 ETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTL----YGNVFSQTTICRFEGLQLSF 242
           +     +LE FA++FKQRRIKLG TQADVG AL  L     G++ SQ+TICRFE L LS 
Sbjct: 254 DPR---DLEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGSL-SQSTICRFESLTLSH 309

Query: 243 KNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGVLETHFLKCPK 302
            NM  LKP+L  WLEEA+ S     +  ++     K++KRTSI    K  LE +F   P+
Sbjct: 310 NNMIALKPILQAWLEEAEKSHREKLTKPELFNGAEKKRKRTSIAAPEKRSLEAYFAIQPR 369

Query: 303 PAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRM 336
           P++++I+++A+ L L+K VVRVWFCN+RQK+KRM
Sbjct: 370 PSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 403


>gi|4505965 POU class 4 homeobox 3 [Homo sapiens]
          Length = 338

 Score =  148 bits (374), Expect = 6e-36
 Identities = 103/268 (38%), Positives = 140/268 (52%), Gaps = 33/268 (12%)

Query: 101 VAHHSPHTNHPNAWGASPAPNPSITSSG-----QPLNVYSQPGFTV-----SGMLEH--- 147
           V+H   H   P+A   + +  P  ++S       P  + S P   V       +LEH   
Sbjct: 66  VSHGKNHPFKPDATYHTMSSVPCTSTSSTVPISHPAALTSHPHHAVHQGLEGDLLEHISP 125

Query: 148 ----GGLTPPPAAASAQSLHPVLREPPDH-----GELGSHHCQDHSDEETPTSD------ 192
                GL  P  +     +HP       H     G    H    HS      SD      
Sbjct: 126 TLSVSGLGAPEHSVMPAQIHPHHLGAMGHLHQAMGMSHPHTVAPHSAMPACLSDVESDPR 185

Query: 193 ELEQFAKQFKQRRIKLGFTQADVGLALGTL----YGNVFSQTTICRFEGLQLSFKNMCKL 248
           ELE FA++FKQRRIKLG TQADVG AL  L     G++ SQ+TICRFE L LS  NM  L
Sbjct: 186 ELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSL-SQSTICRFESLTLSHNNMIAL 244

Query: 249 KPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEI 308
           KP+L  WLEEA+++     S  ++     +++KRTSI    K  LE +F   P+P++++I
Sbjct: 245 KPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKI 304

Query: 309 SSLADSLQLEKEVVRVWFCNRRQKEKRM 336
           +++A+ L L+K VVRVWFCN+RQK+KRM
Sbjct: 305 AAIAEKLDLKKNVVRVWFCNQRQKQKRM 332


>gi|23463326 POU domain class 5, transcription factor 2 [Homo
           sapiens]
          Length = 328

 Score =  144 bits (362), Expect = 2e-34
 Identities = 74/155 (47%), Positives = 100/155 (64%), Gaps = 2/155 (1%)

Query: 193 ELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEGLQLSFKNMCKLKPLL 252
           EL+Q AK+ +Q+R+ LG++QADVG+A+G L+G V SQTTICRFE  QLS  NM KL+PLL
Sbjct: 125 ELQQLAKELRQKRLSLGYSQADVGIAVGALFGKVLSQTTICRFEAQQLSVANMWKLRPLL 184

Query: 253 NKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLA 312
            KWL+E ++         ++  Q   + +R S E  +   LE  F +CPKP  Q+IS +A
Sbjct: 185 KKWLKEVEAENLLGLCKMEMILQQSGKWRRASRERRIGNSLEKFFQRCPKPTPQQISHIA 244

Query: 313 DSLQLEKEVVRVWFCNRRQKEKRMTPPGDQQPHEV 347
             LQL+K+VVRVWF NR +   R  P  D  P E+
Sbjct: 245 GCLQLQKDVVRVWFYNRSKMGSR--PTNDASPREI 277


>gi|223890225 POU class 6 homeobox 1 [Homo sapiens]
          Length = 301

 Score =  132 bits (332), Expect = 5e-31
 Identities = 85/221 (38%), Positives = 116/221 (52%), Gaps = 13/221 (5%)

Query: 119 APNPSITSSGQPLNVYSQPGFTVSGMLEHGGLTPPPAAA-SAQSLHPVL-REPPDHGELG 176
           +P  S     QP     QP   ++        +P PAA  SA +  P+   E P   +L 
Sbjct: 78  SPAKSEVQPIQPTPTVPQPAVVIA--------SPAPAAKPSASAPIPITCSETPTVSQLV 129

Query: 177 SHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFE 236
           S       DE+    +E+ +FAK FK RR+ LG TQ  VG AL    G  +SQ+ ICRFE
Sbjct: 130 SKPHTPSLDEDGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFE 189

Query: 237 GLQLSFKNMCKLKPLLNKWLEEAD--SSTGSPTSIDKIAAQ-GRKRKKRTSIEVSVKGVL 293
            L ++ K+  KLKP+L KWL EA+  +  G    ++ +  +  +KRK+RTS        L
Sbjct: 190 KLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEAL 249

Query: 294 ETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEK 334
             +F K P P  QEI+ +A  L  ++EVVRVWFCNRRQ  K
Sbjct: 250 NAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLK 290


>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
           sapiens]
          Length = 691

 Score =  105 bits (263), Expect = 5e-23
 Identities = 77/259 (29%), Positives = 120/259 (46%), Gaps = 56/259 (21%)

Query: 122 PSITSSGQPLN-------VYSQPGFTVSGMLEHGGLTPPPAAASAQSLHPVLREPPDHGE 174
           PS TS GQ  +        +SQ   + S + +    +   +++SA S+          G+
Sbjct: 415 PSQTSVGQAASQGNLLHLAHSQASMSQSPVRQASSSSSSSSSSSALSV----------GQ 464

Query: 175 LGSHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICR 234
           L S+      + +    +E+ +FAK FK RR+ LG TQ  VG AL    G  +SQ+ ICR
Sbjct: 465 LVSNPQTAAGEVDGVNLEEIREFAKAFKIRRLSLGLTQTQVGQALSATEGPAYSQSAICR 524

Query: 235 ------------------------------------FEGLQLSFKNMCKLKPLLNKWLEE 258
                                               FE L ++ K+  K+KP+L +W+ E
Sbjct: 525 HTILRSHFFLPQEAQENTIASSLTAKLNPGLLYPARFEKLDITPKSAQKIKPVLERWMAE 584

Query: 259 ADSS--TGSPTSIDKIAAQ-GRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSL 315
           A++    G     + I ++  +KRK+RTS       +L  HF K   P+ QE++ +A+ L
Sbjct: 585 AEARHRAGMQNLTEFIGSEPSKKRKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKL 644

Query: 316 QLEKEVVRVWFCNRRQKEK 334
             ++EVVRVWFCN+RQ  K
Sbjct: 645 NYDREVVRVWFCNKRQALK 663


>gi|11641283 LIM homeobox protein 5 [Homo sapiens]
          Length = 402

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 9/98 (9%)

Query: 248 LKPLLNKWLEEADSSTGSPTSIDKIAAQG---------RKRKKRTSIEVSVKGVLETHFL 298
           L P L   L++    T + TS DK  A           ++R  RT+I+      L+  F 
Sbjct: 141 LSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFA 200

Query: 299 KCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRM 336
             PKP       LA    L   V++VWF NRR KE+RM
Sbjct: 201 ATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRM 238


>gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens]
          Length = 397

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 26/80 (32%), Positives = 39/80 (48%)

Query: 274 AQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKE 333
           A+   ++ RT+I       L++ +   PKPA      L+    L+  VV+VWF NRR KE
Sbjct: 153 AEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKE 212

Query: 334 KRMTPPGDQQPHEVYSHTVK 353
           KR+     +Q    Y   +K
Sbjct: 213 KRLKKDAGRQRWGQYFRNMK 232


>gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens]
          Length = 402

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 26/80 (32%), Positives = 39/80 (48%)

Query: 274 AQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKE 333
           A+   ++ RT+I       L++ +   PKPA      L+    L+  VV+VWF NRR KE
Sbjct: 158 AEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKE 217

Query: 334 KRMTPPGDQQPHEVYSHTVK 353
           KR+     +Q    Y   +K
Sbjct: 218 KRLKKDAGRQRWGQYFRNMK 237


>gi|30410785 LIM homeobox protein 1 [Homo sapiens]
          Length = 406

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 259 ADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLE 318
           +D   GS  + D+     ++R  RT+I+      L+  F   PKP       LA    L 
Sbjct: 162 SDKEAGSNENDDQNLG-AKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLN 220

Query: 319 KEVVRVWFCNRRQKEKRM 336
             V++VWF NRR KE+RM
Sbjct: 221 MRVIQVWFQNRRSKERRM 238


>gi|157743259 H6 family homeobox 3 [Homo sapiens]
          Length = 357

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 48/183 (26%), Positives = 66/183 (36%), Gaps = 43/183 (23%)

Query: 153 PPAAASAQSLHPVLREPPDHGELGSHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQ 212
           P +     S  P+L+  PDH EL S    +   EE+ + +         K+     G   
Sbjct: 145 PASGTDRDSPEPLLKADPDHKELDSKSPDEIILEESDSEESK-------KEGEAAPGAAG 197

Query: 213 ADVGLALGTLYGNVFSQTTICRFEGLQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKI 272
           A VG A  T                            P    W + A+S    P      
Sbjct: 198 ASVGAAAAT----------------------------PGAEDWKKGAESPEKKPAC---- 225

Query: 273 AAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQK 332
               RK+K RT    S    LE+ F      ++ E + LA SL L +  V++WF NRR K
Sbjct: 226 ----RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNK 281

Query: 333 EKR 335
            KR
Sbjct: 282 WKR 284


>gi|134284361 LIM homeobox protein 6 isoform 2 [Homo sapiens]
          Length = 377

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 279 RKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRMTP 338
           ++ RTS       V++  F +   P AQ +  LAD   L + V++VWF N R + K+ TP
Sbjct: 249 KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTP 308


>gi|134284359 LIM homeobox protein 6 isoform 1 [Homo sapiens]
          Length = 392

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 279 RKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRMTP 338
           ++ RTS       V++  F +   P AQ +  LAD   L + V++VWF N R + K+ TP
Sbjct: 249 KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTP 308


>gi|15375314 LIM homeobox protein 4 [Homo sapiens]
          Length = 390

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 22/58 (37%), Positives = 31/58 (53%)

Query: 279 RKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRM 336
           ++ RT+I       L+  +   PKPA      L+    L+  VV+VWF NRR KEKR+
Sbjct: 158 KRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRL 215


>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
          Length = 348

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 10/78 (12%)

Query: 276 GRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKR 335
           GRK+K RT    S    LE+ F      ++ E + LA SLQL +  V++WF NRR K KR
Sbjct: 201 GRKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKR 260

Query: 336 ----------MTPPGDQQ 343
                     ++PPG Q+
Sbjct: 261 QLAAELEAASLSPPGAQR 278


>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
          Length = 334

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 277 RKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRM 336
           R ++ RTS        LE  F +C     +E + LA  L L +  V+VWF NRR K+K+ 
Sbjct: 99  RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKK- 157

Query: 337 TPPGDQQPHEVYSHTVKT 354
               D +   V S T  T
Sbjct: 158 DQGKDSELRSVVSETAAT 175


>gi|194353946 homeobox D12 [Homo sapiens]
          Length = 270

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 25/64 (39%), Positives = 33/64 (51%)

Query: 273 AAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQK 332
           AA GR RKKR          LE  FL       Q+   L++ L L  + V++WF NRR K
Sbjct: 197 AAPGRARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMK 256

Query: 333 EKRM 336
           +KR+
Sbjct: 257 KKRV 260


>gi|7110735 ventral anterior homeobox 2 [Homo sapiens]
          Length = 290

 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 22/59 (37%), Positives = 31/59 (52%)

Query: 277 RKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKR 335
           R ++ RTS        LE  F +C     +E + LA  L L +  V+VWF NRR K+K+
Sbjct: 101 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKK 159


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.129    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,782,436
Number of Sequences: 37866
Number of extensions: 910069
Number of successful extensions: 2957
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 2605
Number of HSP's gapped (non-prelim): 438
length of query: 361
length of database: 18,247,518
effective HSP length: 104
effective length of query: 257
effective length of database: 14,309,454
effective search space: 3677529678
effective search space used: 3677529678
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.