Guide to the Human Genome
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Name: POU3F2 Sequence: fasta or formatted (443aa) NCBI GI: 51702521
Description:

POU domain, class 3, transcription factor 2

Referenced in:

Protein Composition and Structure
POU Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         36           5
 C cysteine            0.9          4           1
 D aspartate           4.1         18           2
 E glutamate           3.6         16           2
 F phenylalanine       2.0          9           1
 G glycine            14.2         63          21
 H histidine           7.4         33           3
 I isoleucine          2.0          9           1
 K lysine              4.1         18           2
 L leucine             7.4         33           2
 M methionine          1.4          6           1
 N asparagine          2.0          9           1
 P proline             9.5         42           7
 Q glutamine          11.3         50          21
 R arginine            3.6         16           2
 S serine              7.9         35           3
 T threonine           4.1         18           2
 V valine              3.8         17           3
 W tryptophan          1.1          5           1
 Y tyrosine            1.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   POU domain, class 3, transcription factor 2 
POU3F3                0.467   POU class 3 homeobox 3 
POU3F4                0.401   POU domain, class 3, transcription factor 4 
POU3F1                0.367   POU domain, class 3, transcription factor 1 
POU2F1                0.208   POU class 2 homeobox 1 
POU2F2                0.195   POU domain, class 2, transcription factor 2 
POU2F3                0.194   POU transcription factor 
POU4F2                0.179   Brn3b POU domain transcription factor 
POU5F1                0.177   POU domain, class 5, transcription factor 1 isoform ...
POU5F1                0.177   POU domain, class 5, transcription factor 1 isoform...
POU5F1B               0.172   POU class 5 homeobox 1B 
POU1F1                0.172   pituitary specific transcription factor 1 isoform alp...
POU1F1                0.171   pituitary specific transcription factor 1 isoform b...
POU4F3                0.147   POU class 4 homeobox 3 
POU4F1                0.146   POU domain, class 4, transcription factor 1 
POU5F2                0.127   POU domain class 5, transcription factor 2 
POU6F1                0.120   POU class 6 homeobox 1 
POU6F2                0.087   POU domain, class 6, transcription factor 2 
FOXJ2                 0.046   forkhead box J2 
ATXN2                 0.044   ataxin 2 
ATN1                  0.044   atrophin-1 
ATN1                  0.044   atrophin-1 
MAFA                  0.042   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MN1                   0.039   meningioma  1 
AR                    0.038   androgen receptor isoform 1 
SFPQ                  0.037   splicing factor proline/glutamine rich (polypyrimidin...
SMARCA2               0.037   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.037   SWI/SNF-related matrix-associated actin-dependent re...
NCOA6                 0.037   nuclear receptor coactivator 6 
FAM155A               0.037   family with sequence similarity 155, member A [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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