Guide to the Human Genome
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Name: CDC34 Sequence: fasta or formatted (236aa) NCBI GI: 16357477
Description:

ubiquitin-conjugating enzyme Cdc34

Referenced in:

Additional Cell Cycle Functions
Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         12           1
 C cysteine            1.3          3           1
 D aspartate           8.9         21           2
 E glutamate          10.2         24           3
 F phenylalanine       3.8          9           1
 G glycine             6.4         15           2
 H histidine           0.8          2           1
 I isoleucine          3.8          9           2
 K lysine              5.9         14           1
 L leucine             8.1         19           3
 M methionine          1.3          3           1
 N asparagine          3.4          8           1
 P proline             8.5         20           2
 Q glutamine           2.1          5           1
 R arginine            4.2         10           1
 S serine              6.4         15           2
 T threonine           5.5         13           2
 V valine              7.2         17           1
 W tryptophan          1.7          4           1
 Y tyrosine            5.5         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin-conjugating enzyme Cdc34 
UBE2R2                0.801   ubiquitin-conjugating enzyme UBC3B 
UBE2G1                0.314   ubiquitin-conjugating enzyme E2G 1 
UBE2G2                0.265   ubiquitin-conjugating enzyme E2G 2 isoform 1 
UBE2G2                0.246   ubiquitin-conjugating enzyme E2G 2 isoform 2 
UBE2B                 0.182   ubiquitin-conjugating enzyme E2B 
UBE2A                 0.179   ubiquitin-conjugating enzyme E2A isoform 1 
UBE2D1                0.165   ubiquitin-conjugating enzyme E2D 1 
UBE2I                 0.150   ubiquitin-conjugating enzyme E2I 
UBE2I                 0.150   ubiquitin-conjugating enzyme E2I 
UBE2I                 0.150   ubiquitin-conjugating enzyme E2I 
UBE2I                 0.150   ubiquitin-conjugating enzyme E2I 
UBE2D4                0.147   ubiquitin-conjugating enzyme E2D 4 (putative) 
UBE2D3                0.145   ubiquitin-conjugating enzyme E2D 3 isoform 3 
UBE2L3                0.141   ubiquitin-conjugating enzyme E2L 3 isoform 1 
UBE2N                 0.139   ubiquitin-conjugating enzyme E2N 
UBE2D2                0.139   ubiquitin-conjugating enzyme E2D 2 isoform 1 
UBE2C                 0.137   ubiquitin-conjugating enzyme E2C isoform 1 
UBE2C                 0.137   ubiquitin-conjugating enzyme E2C isoform 4 
UBE2C                 0.137   ubiquitin-conjugating enzyme E2C isoform 4 
UBE2D3                0.137   ubiquitin-conjugating enzyme E2D 3 isoform 2 
UBE2D3                0.137   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.137   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.137   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.137   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.137   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.137   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.137   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D2                0.132   ubiquitin-conjugating enzyme E2D 2 isoform 2 
UBE2T                 0.132   ubiquitin-conjugating enzyme E2T 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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