Guide to the Human Genome
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Name: SNX29 Sequence: fasta or formatted (428aa) NCBI GI: 154091028
Description:

sorting nexin 29

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         32           2
 C cysteine            0.0          0           0
 D aspartate           4.2         18           2
 E glutamate          10.0         43           3
 F phenylalanine       2.8         12           2
 G glycine             5.1         22           1
 H histidine           2.3         10           2
 I isoleucine          3.7         16           1
 K lysine              6.1         26           2
 L leucine             9.8         42           2
 M methionine          2.8         12           2
 N asparagine          4.4         19           1
 P proline             6.8         29           2
 Q glutamine           5.1         22           1
 R arginine            7.0         30           2
 S serine              8.2         35           2
 T threonine           2.6         11           1
 V valine              7.9         34           1
 W tryptophan          0.9          4           1
 Y tyrosine            2.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sorting nexin 29 
KIF16B                0.090   kinesin-like motor protein C20orf23 
SGK3                  0.037   serum/glucocorticoid regulated kinase 3 isoform 2 [H...
SGK3                  0.037   serum/glucocorticoid regulated kinase 3 isoform 1 [H...
SGK3                  0.037   serum/glucocorticoid regulated kinase 3 isoform 1 [H...
PXK                   0.033   PX domain containing serine/threonine kinase 
C6orf174              0.030   hypothetical protein LOC387104 
NISCH                 0.030   nischarin 
SNX13                 0.029   sorting nexin 13 
SNX16                 0.028   sorting nexin 16 isoform a 
SNX16                 0.028   sorting nexin 16 isoform a 
SNX14                 0.027   sorting nexin 14 isoform b 
SNX14                 0.027   sorting nexin 14 isoform a 
CEP250                0.024   centrosomal protein 2 
SNX2                  0.024   sorting nexin 2 
GRIPAP1               0.023   GRIP1 associated protein 1 isoform 2 
GRIPAP1               0.023   GRIP1 associated protein 1 isoform 1 
SNX1                  0.022   sorting nexin 1 isoform c 
SNX1                  0.022   sorting nexin 1 isoform a 
PIK3C2A               0.022   phosphoinositide-3-kinase, class 2 alpha polypeptid...
SNX24                 0.022   SBBI31 protein 
SNX25                 0.022   sorting nexin 25 
NIN                   0.021   ninein isoform 4 
NIN                   0.021   ninein isoform 5 
NIN                   0.021   ninein isoform 1 
NIN                   0.021   ninein isoform 2 
CCDC154               0.021   coiled-coil domain containing 154 
MYH9                  0.021   myosin, heavy polypeptide 9, non-muscle 
SNX1                  0.021   sorting nexin 1 isoform b 
CCHCR1                0.021   coiled-coil alpha-helical rod protein 1 isoform 1 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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