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Search of human proteins with 148613882
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148613882 homeobox A4 [Homo sapiens]
(320 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148613882 homeobox A4 [Homo sapiens] 680 0.0
gi|13273315 homeobox B4 [Homo sapiens] 259 3e-69
gi|23397672 homeobox D4 [Homo sapiens] 234 1e-61
gi|24497538 homeobox C4 [Homo sapiens] 226 2e-59
gi|24497540 homeobox C4 [Homo sapiens] 226 2e-59
gi|24497517 homeobox A5 [Homo sapiens] 152 3e-37
gi|4504469 homeobox B5 [Homo sapiens] 152 3e-37
gi|11321638 homeobox C5 [Homo sapiens] 139 3e-33
gi|13489077 homeobox A6 [Homo sapiens] 127 2e-29
gi|23503237 homeobox B6 [Homo sapiens] 125 7e-29
gi|24497513 homeobox A3 isoform a [Homo sapiens] 122 4e-28
gi|13562112 homeobox A3 isoform a [Homo sapiens] 122 4e-28
gi|24497556 homeobox A7 [Homo sapiens] 122 6e-28
gi|85068580 homeobox B7 [Homo sapiens] 119 3e-27
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 117 1e-26
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 117 1e-26
gi|19923391 homeobox D3 [Homo sapiens] 114 1e-25
gi|89257348 homeo box HB9 [Homo sapiens] 113 3e-25
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 112 4e-25
gi|84570137 homeobox B3 [Homo sapiens] 105 4e-23
gi|15029506 homeobox D8 [Homo sapiens] 103 2e-22
gi|4504465 homeobox B2 [Homo sapiens] 102 3e-22
gi|24497526 homeobox B1 [Homo sapiens] 102 5e-22
gi|169636435 caudal type homeobox 2 [Homo sapiens] 100 1e-21
gi|24497515 homeobox A3 isoform b [Homo sapiens] 99 5e-21
gi|23510368 homeobox D11 [Homo sapiens] 98 9e-21
gi|121114296 caudal type homeobox 1 [Homo sapiens] 98 1e-20
gi|13273317 homeobox B8 [Homo sapiens] 97 1e-20
gi|10140847 homeobox A2 [Homo sapiens] 97 2e-20
gi|15029508 homeobox B9 [Homo sapiens] 96 3e-20
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 680 bits (1754), Expect = 0.0
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQL 60
MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQL
Sbjct: 1 MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQL 60
Query: 61 PHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPP 120
PHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPP
Sbjct: 61 PHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPP 120
Query: 121 AQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLA 180
AQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLA
Sbjct: 121 AQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLA 180
Query: 181 DKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYL 240
DKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYL
Sbjct: 181 DKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYL 240
Query: 241 TRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQTQ 300
TRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQTQ
Sbjct: 241 TRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQTQ 300
Query: 301 SPHLHPHPHPSTSTPVPSSI 320
SPHLHPHPHPSTSTPVPSSI
Sbjct: 301 SPHLHPHPHPSTSTPVPSSI 320
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 259 bits (661), Expect = 3e-69
Identities = 144/296 (48%), Positives = 167/296 (56%), Gaps = 53/296 (17%)
Query: 1 MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQL 60
M MSSFLINSNY++PKFPP EEY+Q P+ H P
Sbjct: 1 MAMSSFLINSNYVDPKFPPCEEYSQSD-------------------YLPSDHSP------ 35
Query: 61 PHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPP 120
YYA RE ++ A + A Y PG PP P PP
Sbjct: 36 -----------GYYAGGQRRESSFQPEAGFGRRAACTV---QRYAACRDPGPPPPPPPPP 81
Query: 121 AQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLA 180
P L P+ P P A+ P +RCEA ++P P P P
Sbjct: 82 PPPPPPG--------LSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPPCAQNPLHP---- 129
Query: 181 DKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYL 240
SP KEPVVYPWM+K+HVS VNP+Y GGEPKRSRTAYTRQQVLELEKEFH+NRYL
Sbjct: 130 --SPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYL 187
Query: 241 TRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGK 296
TRRRR+EIAH LCLSERQ+KIWFQNRRMKWKKDHKLPNTK+RS +A ++ GPPG+
Sbjct: 188 TRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAGSAGGPPGR 243
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 234 bits (596), Expect = 1e-61
Identities = 149/311 (47%), Positives = 170/311 (54%), Gaps = 73/311 (23%)
Query: 1 MTMSSFLINSNYIEPKFPPFEEYAQ--HSGSGGADGGPGGGPGYQ-QPPAPPTQHLPLQQ 57
M MSS+++NS Y++PKFPP EEY Q + G GAD GG G QPP
Sbjct: 1 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPG---------- 50
Query: 58 PQLPHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPE 117
LYP + + GG+ PG
Sbjct: 51 -------------------------------LYPRPDFGEQPF-----GGSGPG---PGS 71
Query: 118 QPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPA-GGSAPACP 176
PA+ G G H P P P P PP AP PG A S P P
Sbjct: 72 ALPARGHGQEPGGPGGHYAAPGEPCPAPP--APPPAP--------LPGARAYSQSDPKQP 121
Query: 177 LLLADKSPLGLKGKEP-VVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFH 235
P G K+P VVYPWMKK+HV++VNP+Y GGEPKRSRTAYTRQQVLELEKEFH
Sbjct: 122 -------PSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFH 174
Query: 236 FNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPG 295
FNRYLTRRRRIEIAHTLCLSERQ+KIWFQNRRMKWKKDHKLPNTK RSS+S+S+S+
Sbjct: 175 FNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSSCSSS 234
Query: 296 KAQTQSPHLHP 306
A +Q HL P
Sbjct: 235 VAPSQ--HLQP 243
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 226 bits (577), Expect = 2e-59
Identities = 136/311 (43%), Positives = 165/311 (53%), Gaps = 64/311 (20%)
Query: 1 MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQL 60
M MSS+L++SNYI+PKFPP EEY+Q+S ++P P+
Sbjct: 1 MIMSSYLMDSNYIDPKFPPCEEYSQNS------------------------YIPEHSPEY 36
Query: 61 PHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPP 120
GR + + P P YP + T+ PG
Sbjct: 37 Y----GRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQ-------GPGN-------- 77
Query: 121 AQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLA 180
++ GPA H P + CE AP + + AP A
Sbjct: 78 SRGHGPAQAGHHH----------------PEKSQSLCEPAPLSGASASPSPAPPACSQPA 121
Query: 181 DKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYL 240
P K+P+VYPWMKKIHVS VNP+YNGGEPKRSRTAYTRQQVLELEKEFH+NRYL
Sbjct: 122 PDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYL 181
Query: 241 TRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASA-----SAGPPG 295
TRRRRIEIAH+LCLSERQ+KIWFQNRRMKWKKDH+LPNTK+RS+ A A SA PG
Sbjct: 182 TRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPG 241
Query: 296 KAQTQSPHLHP 306
++ S P
Sbjct: 242 TSEDHSQSATP 252
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 226 bits (577), Expect = 2e-59
Identities = 136/311 (43%), Positives = 165/311 (53%), Gaps = 64/311 (20%)
Query: 1 MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQL 60
M MSS+L++SNYI+PKFPP EEY+Q+S ++P P+
Sbjct: 1 MIMSSYLMDSNYIDPKFPPCEEYSQNS------------------------YIPEHSPEY 36
Query: 61 PHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPP 120
GR + + P P YP + T+ PG
Sbjct: 37 Y----GRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQ-------GPGN-------- 77
Query: 121 AQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLA 180
++ GPA H P + CE AP + + AP A
Sbjct: 78 SRGHGPAQAGHHH----------------PEKSQSLCEPAPLSGASASPSPAPPACSQPA 121
Query: 181 DKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYL 240
P K+P+VYPWMKKIHVS VNP+YNGGEPKRSRTAYTRQQVLELEKEFH+NRYL
Sbjct: 122 PDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYL 181
Query: 241 TRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASA-----SAGPPG 295
TRRRRIEIAH+LCLSERQ+KIWFQNRRMKWKKDH+LPNTK+RS+ A A SA PG
Sbjct: 182 TRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPG 241
Query: 296 KAQTQSPHLHP 306
++ S P
Sbjct: 242 TSEDHSQSATP 252
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 152 bits (385), Expect = 3e-37
Identities = 87/205 (42%), Positives = 108/205 (52%), Gaps = 13/205 (6%)
Query: 94 GAADTAYPYGYRGGASPGRP-----------PQPEQPPAQAKGPAHGLHASHVLQPQLPP 142
G+ + A Y A+P P PQP+ P A P+ G + H + L
Sbjct: 65 GSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKNSLSN 124
Query: 143 PLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYPWMKKIH 202
A + T + + A P +P +YPWM+K+H
Sbjct: 125 SSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLH 184
Query: 203 VSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIW 262
+S N G E KR+RTAYTR Q LELEKEFHFNRYLTRRRRIEIAH LCLSERQ+KIW
Sbjct: 185 ISHDN--IGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIW 242
Query: 263 FQNRRMKWKKDHKLPNTKMRSSNSA 287
FQNRRMKWKKD+KL + M ++ A
Sbjct: 243 FQNRRMKWKKDNKLKSMSMAAAGGA 267
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 152 bits (385), Expect = 3e-37
Identities = 102/292 (34%), Positives = 145/292 (49%), Gaps = 33/292 (11%)
Query: 3 MSSFLINSNYIEPKFPPFEEYAQ-HSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQLP 61
MSS+ +NS ++P +Y + GSG + G Y+ P A T +
Sbjct: 1 MSSYFVNS--FSGRYPNGPDYQLLNYGSGSSLSG-----SYRDPAAMHTGSYGYNYNGMD 53
Query: 62 HAGGGREPTASYYAPRTAREPAYPAAALYP----AHGAADTAYPYGY--RGGASPGRPPQ 115
+ ++S++ A+PA A P A + + P G S G P
Sbjct: 54 LSVNRSSASSSHFGAVGESSRAFPAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAKPS 113
Query: 116 PEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPAC 175
P QA + + + + + + A ++P A P
Sbjct: 114 ASSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPE------------- 160
Query: 176 PLLLADKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFH 235
P+ + +P +G+ P ++PWM+K+H+S G + KR+RTAYTR Q LELEKEFH
Sbjct: 161 PMATSTAAP---EGQTPQIFPWMRKLHISH---DMTGPDGKRARTAYTRYQTLELEKEFH 214
Query: 236 FNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSA 287
FNRYLTRRRRIEIAH LCLSERQ+KIWFQNRRMKWKKD+KL + + ++ SA
Sbjct: 215 FNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSA 266
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 139 bits (350), Expect = 3e-33
Identities = 84/182 (46%), Positives = 103/182 (56%), Gaps = 31/182 (17%)
Query: 102 YGYRGGASP-GRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAA 160
+G A+P P +P A A G A G + L P + +A PA R +++
Sbjct: 59 HGVDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGM---YSQKAARPALEERAKSS 115
Query: 161 ------PATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGE 214
A G PAG S P P P +YPWM K+H+S + +
Sbjct: 116 GEIKEEQAQTGQPAGLSQPPAP---------------PQIYPWMTKLHMS------HETD 154
Query: 215 PKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDH 274
KRSRT+YTR Q LELEKEFHFNRYLTRRRRIEIA+ LCL+ERQ+KIWFQNRRMKWKKD
Sbjct: 155 GKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDS 214
Query: 275 KL 276
K+
Sbjct: 215 KM 216
Score = 32.0 bits (71), Expect = 0.75
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 18 PPFEEYAQHSGSGGADGGPGGGP-GYQQPPAPPTQHLPLQQPQLPHAGGGREPTASY 73
P EE A+ SG + G P G QPPAPP + + + + H G+ SY
Sbjct: 106 PALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSY 162
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 127 bits (318), Expect = 2e-29
Identities = 61/99 (61%), Positives = 74/99 (74%), Gaps = 2/99 (2%)
Query: 194 VYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 253
VYPWM++++ A + G +R R YTR Q LELEKEFHFNRYLTRRRRIEIA+ LC
Sbjct: 136 VYPWMQRMNSCA--GAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALC 193
Query: 254 LSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAG 292
L+ERQ+KIWFQNRRMKWKK++KL N+ S + A AG
Sbjct: 194 LTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAG 232
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 125 bits (313), Expect = 7e-29
Identities = 83/190 (43%), Positives = 99/190 (52%), Gaps = 22/190 (11%)
Query: 101 PYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAA 160
PYG G G PPA G +G A P PA R E+A
Sbjct: 42 PYGPGPGQDKGFATSSYYPPA---GGGYGRAAPCDYGPA-----------PAFYREKESA 87
Query: 161 PATPGV---PAGGSAPACPLLLADKSPLGLKGKEPV---VYPWMKKIHVSAVNPSYNGGE 214
A G P P DKS G ++ VYPWM++++ + N S G
Sbjct: 88 CALSGADEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMN--SCNSSSFGPS 145
Query: 215 PKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDH 274
+R R YTR Q LELEKEFH+NRYLTRRRRIEIAH LCL+ERQ+KIWFQNRRMKWKK+
Sbjct: 146 GRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKES 205
Query: 275 KLPNTKMRSS 284
KL + S+
Sbjct: 206 KLLSASQLSA 215
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 122 bits (306), Expect = 4e-28
Identities = 92/271 (33%), Positives = 117/271 (43%), Gaps = 29/271 (10%)
Query: 41 GYQQPPAPPTQHLPLQQPQLPHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAY 100
GY A + QQP A G + Y+ P + + A AH ++
Sbjct: 15 GYPYQAANGFAYNANQQPYPASAALGAD--GEYHRPACSLQSPSSAGGHPKAHELSEACL 72
Query: 101 PYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAA 160
A P +PP +PP P P P P QP PPA
Sbjct: 73 R---TLSAPPSQPPSLGEPPLHPPPPQAA--------PPAPQPPQPAPQPPAPTPAAPPP 121
Query: 161 PATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYPWMKKI--HVSAVNPSYNGGEP--- 215
P++ P S P A L ++PWMK+ + S + GE
Sbjct: 122 PSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAG 181
Query: 216 ----------KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQN 265
KR+RTAYT Q++ELEKEFHFNRYL R RR+E+A+ L L+ERQ+KIWFQN
Sbjct: 182 DKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 241
Query: 266 RRMKWKKDHKLPNTKMRS-SNSASASAGPPG 295
RRMK+KKD K S S S S PPG
Sbjct: 242 RRMKYKKDQKGKGMLTSSGGQSPSRSPVPPG 272
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 122 bits (306), Expect = 4e-28
Identities = 92/271 (33%), Positives = 117/271 (43%), Gaps = 29/271 (10%)
Query: 41 GYQQPPAPPTQHLPLQQPQLPHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAY 100
GY A + QQP A G + Y+ P + + A AH ++
Sbjct: 15 GYPYQAANGFAYNANQQPYPASAALGAD--GEYHRPACSLQSPSSAGGHPKAHELSEACL 72
Query: 101 PYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAA 160
A P +PP +PP P P P P QP PPA
Sbjct: 73 R---TLSAPPSQPPSLGEPPLHPPPPQAA--------PPAPQPPQPAPQPPAPTPAAPPP 121
Query: 161 PATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYPWMKKI--HVSAVNPSYNGGEP--- 215
P++ P S P A L ++PWMK+ + S + GE
Sbjct: 122 PSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAG 181
Query: 216 ----------KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQN 265
KR+RTAYT Q++ELEKEFHFNRYL R RR+E+A+ L L+ERQ+KIWFQN
Sbjct: 182 DKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 241
Query: 266 RRMKWKKDHKLPNTKMRS-SNSASASAGPPG 295
RRMK+KKD K S S S S PPG
Sbjct: 242 RRMKYKKDQKGKGMLTSSGGQSPSRSPVPPG 272
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 122 bits (305), Expect = 6e-28
Identities = 60/102 (58%), Positives = 69/102 (67%), Gaps = 18/102 (17%)
Query: 194 VYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 253
+YPWM+ +G + KR R YTR Q LELEKEFHFNRYLTRRRRIEIAH LC
Sbjct: 119 IYPWMRS----------SGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 168
Query: 254 LSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPG 295
L+ERQ+KIWFQNRRMKWKK+HK +A+A P G
Sbjct: 169 LTERQIKIWFQNRRMKWKKEHK--------DEGPTAAAAPEG 202
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 119 bits (299), Expect = 3e-27
Identities = 57/96 (59%), Positives = 67/96 (69%), Gaps = 10/96 (10%)
Query: 194 VYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 253
+YPWM+ +G + KR R YTR Q LELEKEFH+NRYLTRRRRIEIAHTLC
Sbjct: 126 IYPWMRS----------SGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLC 175
Query: 254 LSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASA 289
L+ERQ+KIWFQNRRMKWKK++K + A A
Sbjct: 176 LTERQIKIWFQNRRMKWKKENKTAGPGTTGQDRAEA 211
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 117 bits (294), Expect = 1e-26
Identities = 57/98 (58%), Positives = 72/98 (73%), Gaps = 2/98 (2%)
Query: 194 VYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 253
+YPWM++++ S Y G + +R R Y+R Q LELEKEFHFNRYLTRRRRIEIA+ LC
Sbjct: 40 IYPWMQRMN-SHSGVGY-GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 97
Query: 254 LSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASA 291
L+ERQ+KIWFQNRRMKWKK+ L +T A+A +
Sbjct: 98 LTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADS 135
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 117 bits (294), Expect = 1e-26
Identities = 57/98 (58%), Positives = 72/98 (73%), Gaps = 2/98 (2%)
Query: 194 VYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 253
+YPWM++++ S Y G + +R R Y+R Q LELEKEFHFNRYLTRRRRIEIA+ LC
Sbjct: 122 IYPWMQRMN-SHSGVGY-GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 179
Query: 254 LSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASA 291
L+ERQ+KIWFQNRRMKWKK+ L +T A+A +
Sbjct: 180 LTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADS 217
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 114 bits (285), Expect = 1e-25
Identities = 95/282 (33%), Positives = 118/282 (41%), Gaps = 41/282 (14%)
Query: 64 GGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPPAQA 123
G G T Y T +P P AA + DT YP G A + P + PA
Sbjct: 31 GYGYSKTTDTYGYSTPHQPYPPPAAA----SSLDTDYP----GSACSIQSSAPLRAPAHK 82
Query: 124 KGPAHGLHASHVLQP-----------QLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSA 172
+G ++P PP L PP P P + GG
Sbjct: 83 GAELNG----SCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGV 138
Query: 173 PACPLLLADKSPLGLKGKEPVVYPWMKKIHV-------------SAVNPSYNGGEPKRSR 219
PA + ++PWMK+ S + S G KR R
Sbjct: 139 PAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVR 198
Query: 220 TAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNT 279
TAYT Q++ELEKEFHFNRYL R RR+E+A+ L L+ERQ+KIWFQNRRMK+KKD K
Sbjct: 199 TAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGI 258
Query: 280 KMRSSNSASASAGPP--GKA--QTQSPHLHPHPHPSTSTPVP 317
+ S S S PP G A S L P P + P P
Sbjct: 259 -LHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSP 299
Score = 30.8 bits (68), Expect = 1.7
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 28 GSGGADGGPGGG--PGY---QQPPAPPTQHLPLQQPQLPHAGGGREPTASYYAPRTAREP 82
G+G + GG GG PG QQPP PP L + GGG P +
Sbjct: 94 GTGNSQGGGGGSQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSS 153
Query: 83 AYPAAALYP 91
A + ++P
Sbjct: 154 ATISKQIFP 162
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 113 bits (282), Expect = 3e-25
Identities = 95/302 (31%), Positives = 127/302 (42%), Gaps = 46/302 (15%)
Query: 28 GSGGADGGPGGG--PGYQQPPAPPTQHLPLQQPQLPH----------------AGGGREP 69
G GGA GG G P +PPA P L + P P AGGG
Sbjct: 46 GGGGASGGTSGSCSPASSEPPAAPADRLRAESPSPPRLLAAHCALLPKPGFLGAGGGGGG 105
Query: 70 TAS------YYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPPAQA 123
T ++A A A AAA A G A +P G +GGA PAQA
Sbjct: 106 TGGGHGGPHHHAHPGAAAAAAAAAAAAAAGGLALGLHPGGAQGGAGL---------PAQA 156
Query: 124 KGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVP---AGGSAPACPLLLA 180
H ++ Q A+ + P+ A PA P P G+ L A
Sbjct: 157 ALYGHPVYGYSAAAAAAALAGQHPALSYSYPQVQGAHPAHPADPIKLGAGTFQLDQWLRA 216
Query: 181 DKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYL 240
+ + + P M + A + G+ +R RTA+T QQ+LELE +F N+YL
Sbjct: 217 STAGM--------ILPKMPDFNSQAQSNLL--GKCRRPRTAFTSQQLLELEHQFKLNKYL 266
Query: 241 TRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQTQ 300
+R +R E+A +L L+E QVKIWFQNRRMKWK+ K + + G GK +
Sbjct: 267 SRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKKAKEQAAQEAEKQKGGGGGAGKGGAE 326
Query: 301 SP 302
P
Sbjct: 327 EP 328
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 112 bits (280), Expect = 4e-25
Identities = 79/214 (36%), Positives = 100/214 (46%), Gaps = 33/214 (15%)
Query: 101 PYGYRGGASPGRPPQP-------EQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAA 153
P ++ G +P P QPP P G A L+ PP + P VPP A
Sbjct: 17 PCAFQRGPAPEFSASPPACLYMGRQPPPPPPHPFPG--ALGALEQGSPPDISPYEVPPLA 74
Query: 154 P--------RRCEAAPATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYPWMKKIHVSA 205
A A P PAG A+ L + + +PWMK A
Sbjct: 75 DDPAVAHLHHHLPAQLALPHPPAGPFPEG-----AEPGVLEEPNRVQLPFPWMKSTKAHA 129
Query: 206 VNPSYNGG-------EPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQ 258
+ GG E KR+RTAYTR Q+LELEKEF FN+Y++R RR+E+A L L+ER
Sbjct: 130 WKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERH 189
Query: 259 VKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAG 292
+KIWFQNRRMKWKK+ K R +A G
Sbjct: 190 IKIWFQNRRMKWKKE----EDKKRGGGTAVGGGG 219
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 105 bits (263), Expect = 4e-23
Identities = 99/310 (31%), Positives = 124/310 (40%), Gaps = 56/310 (18%)
Query: 30 GGADGGPGG-GPGYQQPPAPPTQ---HLPLQQPQ-----------LPHAGGGREPTASYY 74
GG PG G G+ PP PP Q HL + PHA +E S
Sbjct: 16 GGYSSYPGSNGFGFDVPPQPPFQAATHLEGDYQRSACSLQSLGNAAPHAKS-KELNGSCM 74
Query: 75 APRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASH 134
P A EP P +A P +S G P PP GP +
Sbjct: 75 RPGLAPEPLSA-----PPGSPPPSAAPTSATSNSSNGGGPSKSGPPKC--GPGTNSTLTK 127
Query: 135 VLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLA-----DKSPLGLKG 189
+ P + Q + +P E G GG + DKSP G
Sbjct: 128 QIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPG--- 184
Query: 190 KEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIA 249
KR+RTAYT Q++ELEKEFHFNRYL R RR+E+A
Sbjct: 185 ----------------------SAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMA 222
Query: 250 HTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQTQSPHLHP--H 307
+ L LSERQ+KIWFQNRRMK+KKD K SS S + PP Q+ + ++
Sbjct: 223 NLLNLSERQIKIWFQNRRMKYKKDQKAKGL-ASSSGGPSPAGSPPQPMQSTAGFMNALHS 281
Query: 308 PHPSTSTPVP 317
PS +P P
Sbjct: 282 MTPSYESPSP 291
Score = 30.4 bits (67), Expect = 2.2
Identities = 37/135 (27%), Positives = 44/135 (32%), Gaps = 25/135 (18%)
Query: 106 GGASP-GRPPQPEQPPAQAKGPAHGLHAS------------HVLQPQLPPPLQPRAVPPA 152
GG SP G PPQP Q A H + S H LP QP
Sbjct: 257 GGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNYQPPLKGCG 316
Query: 153 APRRCEAAPATPGVP----AGGSAPACPLLLADKSPLGLKG--------KEPVVYPWMKK 200
AP++ PA P A G A P + +G G P +Y
Sbjct: 317 APQKYPPTPAPEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHL 376
Query: 201 IHVSAVNPSYNGGEP 215
H + N YNG P
Sbjct: 377 SHHPSGNLDYNGAPP 391
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 103 bits (257), Expect = 2e-22
Identities = 93/275 (33%), Positives = 115/275 (41%), Gaps = 53/275 (19%)
Query: 8 INSNYIEPKFPPFEEYAQHSGSGGADGGPGGGP-GYQQPPAPPTQHLPLQQPQLPHAG-- 64
IN Y + F P E +H+ + A G G+ P APP H P P +G
Sbjct: 27 INPTYYDCHFAP-EVGGRHAAAAAALQLYGNSAAGF--PHAPPQAHAH-PHPSPPPSGTG 82
Query: 65 -GGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPPAQA 123
GGRE Y +P G+ AY P PP P PP
Sbjct: 83 CGGREGRGQEY--------------FHPGGGSPAAAYQ---AAPPPPPHPPPPPPPPPCG 125
Query: 124 KGPAHGLHASHV----LQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLL 179
HG A LQ Q Q A P C+++ G
Sbjct: 126 GIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPD-CKSSSGNIG-------------- 170
Query: 180 ADKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRY 239
D L ++PWM+ P G +R R Y+R Q LELEKEF FN Y
Sbjct: 171 EDPDHLNQSSSPSQMFPWMR--------PQAAPGR-RRGRQTYSRFQTLELEKEFLFNPY 221
Query: 240 LTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDH 274
LTR+RRIE++H L L+ERQVKIWFQNRRMKWKK++
Sbjct: 222 LTRKRRIEVSHALALTERQVKIWFQNRRMKWKKEN 256
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 102 bits (255), Expect = 3e-22
Identities = 71/179 (39%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 142 PPLQPRAVP---PAAPRRCEAAPATPG-----VPAGGSAPACPLLLADKSPLGLKGKEPV 193
P LQP A P + +R E PA P +PA AP P + KS
Sbjct: 54 PSLQPGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATS 113
Query: 194 VYPWMKKIHVSAVN--------PSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRR 245
P + S V P GG +R RTAYT Q+LELEKEFHFN+YL R RR
Sbjct: 114 PSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRR 173
Query: 246 IEIAHTLCLSERQVKIWFQNRRMKWKK--DHKLPNTKMRSSNSASASAGPPGKAQTQSP 302
+EIA L L+ERQVK+WFQNRRMK K+ H+ P + A P + SP
Sbjct: 174 VEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASP 232
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 102 bits (254), Expect = 5e-22
Identities = 100/310 (32%), Positives = 125/310 (40%), Gaps = 52/310 (16%)
Query: 17 FPPFEEYAQHS-GSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQLPHAGGGREPTASYYA 75
FPP A S S G GG P +QQ P Q +P ++
Sbjct: 31 FPPSSAQAVDSYASEGRYGGGLSSPAFQQNSGYPAQ----------------QPPSTLGV 74
Query: 76 PRTAREPA-YPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASH 134
P + P+ Y AA P++G + YP G G G P AQ G + G A
Sbjct: 75 PFPSSAPSGYAPAACSPSYGPSQY-YPLGQSEG--DGGYFHPSSYGAQLGGLSDGYGAGG 131
Query: 135 VLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLKGKEPVV 194
P P P+ P + APA + + CP +P
Sbjct: 132 AG----PGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPS--EPNTPTAR------T 179
Query: 195 YPWMK--KIHVSAVNPSYNG-GEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHT 251
+ WMK + S G G P RT +T +Q+ ELEKEFHFN+YL+R RR+EIA T
Sbjct: 180 FDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAAT 239
Query: 252 LCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPP-------GKAQTQSPHL 304
L L+E QVKIWFQNRRMK KK R PP G A QS
Sbjct: 240 LELNETQVKIWFQNRRMKQKK---------REREEGRVPPAPPGCPKEAAGDASDQSTCT 290
Query: 305 HPHPHPSTST 314
P PS+ T
Sbjct: 291 SPEASPSSVT 300
>gi|169636435 caudal type homeobox 2 [Homo sapiens]
Length = 313
Score = 100 bits (250), Expect = 1e-21
Identities = 87/282 (30%), Positives = 114/282 (40%), Gaps = 28/282 (9%)
Query: 62 HAGGGREPTASYYAPRTAREPAYPAAALYPAHGAA------DTAYPYGYRGGASPGRPPQ 115
H+GG ++ +P P YP Y AA D+A G A+ G P +
Sbjct: 20 HSGGLNLAPQNFVSP-----PQYPDYGGYHVAAAAAAAANLDSAQSPGPSWPAAYGAPLR 74
Query: 116 -------PEQPPAQAKGPAHGLHASH---VLQPQLPPPLQPRAVPPAAPRRCEAAPATPG 165
P A A AHGL+ + P P P P AAP+
Sbjct: 75 EDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPHHHPHHPAAAPSCAS 134
Query: 166 --VPAGGSAPACPLLLADKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYT 223
+ P P A L G+ + WM+K ++ + R YT
Sbjct: 135 GLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQVKTRTKDKYRVVYT 194
Query: 224 RQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRS 283
Q LELEKEFH++RY+T RR+ E+A TL LSERQVKIWFQNRR K +K +K + +
Sbjct: 195 DHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQ 254
Query: 284 SNSASASAGPPGKAQTQSPHLHPHPHP-----STSTPVPSSI 320
PP Q Q L P P S VP S+
Sbjct: 255 QQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSV 296
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 99.0 bits (245), Expect = 5e-21
Identities = 51/81 (62%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 216 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK 275
KR+RTAYT Q++ELEKEFHFNRYL R RR+E+A+ L L+ERQ+KIWFQNRRMK+KKD K
Sbjct: 34 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93
Query: 276 LPNTKMRS-SNSASASAGPPG 295
S S S S PPG
Sbjct: 94 GKGMLTSSGGQSPSRSPVPPG 114
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 98.2 bits (243), Expect = 9e-21
Identities = 86/260 (33%), Positives = 112/260 (43%), Gaps = 41/260 (15%)
Query: 29 SGGADGGPGGGPGYQQP----------PAPPTQHLPLQQPQLPHAGGGREPTASYYAPRT 78
SGG GG GGG G P A + +Q+ LP AG R P + AP
Sbjct: 89 SGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAG--RRPDVLFKAP-- 144
Query: 79 AREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASHVLQP 138
EP AA P HG A A + G + P +Q A GP P
Sbjct: 145 --EPV--CAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPGPPFA-------GP 193
Query: 139 QLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLK------GKEP 192
Q PPP PP + G GG +P C P G G+ P
Sbjct: 194 QPPPP----PAPPQPEGAADKGDPRTGAGGGGGSP-CTKATPGSEPKGAAEGSGGDGEGP 248
Query: 193 VVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTL 252
+K SAV P + ++ R YT+ Q+ ELE+EF FN Y+ + +R++++ L
Sbjct: 249 PGEAGAEKSS-SAVAPQRS----RKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRML 303
Query: 253 CLSERQVKIWFQNRRMKWKK 272
L++RQVKIWFQNRRMK KK
Sbjct: 304 NLTDRQVKIWFQNRRMKEKK 323
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 97.8 bits (242), Expect = 1e-20
Identities = 94/292 (32%), Positives = 113/292 (38%), Gaps = 83/292 (28%)
Query: 37 GGGPGYQQPPAPPTQHLPLQQPQLP---HAGGGREPTASYYAPRTAREPAYPAAALYPAH 93
G GP PPAPP P Q P H P ++ AP A P AA Y
Sbjct: 24 GLGPQAYGPPAPPPA--PPQYPDFSSYSHVEPAPAPPTAWGAPFPA--PKDDWAAAYGPG 79
Query: 94 GAADTAYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAA 153
AA A P G P P P P GP GL A QP P
Sbjct: 80 PAAPAASPASLAFGPPPDFSPVPAPP-----GPGPGLLA------------QPLGGP--- 119
Query: 154 PRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGG 213
P++PG + P Y WM++ +V GG
Sbjct: 120 -----GTPSSPGA-----------------------QRPTPYEWMRR----SVAAGGGGG 147
Query: 214 EPK-----RSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRM 268
K + R YT Q LELEKEFH++RY+T RR+ E+A L L+ERQVKIWFQNRR
Sbjct: 148 SGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRA 207
Query: 269 KWKKDHKLPNTKMRSSNSASASAGPPGKAQTQSPHLHPHPHPSTSTPVPSSI 320
K +K +K K Q Q P P H T+TP S+
Sbjct: 208 KERKVNK-------------------KKQQQQQPPQPPMAHDITATPAGPSL 240
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 97.4 bits (241), Expect = 1e-20
Identities = 50/90 (55%), Positives = 63/90 (70%), Gaps = 12/90 (13%)
Query: 194 VYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 253
++PWM+ P G +R R Y+R Q LELEKEF FN YLTR+RRIE++H L
Sbjct: 134 LFPWMR--------PQAAAGR-RRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALG 184
Query: 254 LSERQVKIWFQNRRMKWKKDH---KLPNTK 280
L+ERQVKIWFQNRRMKWKK++ K P++K
Sbjct: 185 LTERQVKIWFQNRRMKWKKENNKDKFPSSK 214
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 96.7 bits (239), Expect = 2e-20
Identities = 64/164 (39%), Positives = 80/164 (48%), Gaps = 42/164 (25%)
Query: 140 LPPPLQ---PRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYP 196
+PPP + P P + PR P PAG SP+ +P YP
Sbjct: 48 IPPPFEQTIPSLNPGSHPRHGAGGRPKPS-PAGSRG----------SPVPAGALQPPEYP 96
Query: 197 WMKK----------------IHVSAVNPSY------------NGGEPKRSRTAYTRQQVL 228
WMK+ +A P+ +GG +R RTAYT Q+L
Sbjct: 97 WMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLL 156
Query: 229 ELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKK 272
ELEKEFHFN+YL R RR+EIA L L+ERQVK+WFQNRRMK K+
Sbjct: 157 ELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 200
>gi|15029508 homeobox B9 [Homo sapiens]
Length = 250
Score = 96.3 bits (238), Expect = 3e-20
Identities = 87/228 (38%), Positives = 99/228 (43%), Gaps = 42/228 (18%)
Query: 90 YPAHGAADTAYPYG-YRGGASPGRPPQPEQPPA--QAKGPAHGL-------HASHVLQPQ 139
+ + A +P G Y PG E P Q K P G HAS L
Sbjct: 18 HESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFGASWAPLSPHASGSLPSV 77
Query: 140 LPPPLQPRAVPPAAPRRC----EAAPATPGVPAGGSAP--ACPLLLADKSPLGL------ 187
P +QP+ VPPA R E AP P G A A PLL A L
Sbjct: 78 YHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEPLLGAPGELLKQGTPEYS 137
Query: 188 ----KGKEPVV------YPWMK-------KIHVSAVNPSYN---GGEPKRSRTAYTRQQV 227
G+E V+ Y K K NPS N ++ R YT+ Q
Sbjct: 138 LETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQT 197
Query: 228 LELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK 275
LELEKEF FN YLTR RR E+A L LSERQVKIWFQNRRMK KK +K
Sbjct: 198 LELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNK 245
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.132 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,945,745
Number of Sequences: 37866
Number of extensions: 1286527
Number of successful extensions: 16856
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 1338
Number of HSP's that attempted gapping in prelim test: 9512
Number of HSP's gapped (non-prelim): 6482
length of query: 320
length of database: 18,247,518
effective HSP length: 102
effective length of query: 218
effective length of database: 14,385,186
effective search space: 3135970548
effective search space used: 3135970548
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.