Guide to the Human Genome
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Name: FAM81A Sequence: fasta or formatted (368aa) NCBI GI: 148613880
Description:

hypothetical protein LOC145773

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         22           2
 C cysteine            0.5          2           1
 D aspartate           4.9         18           2
 E glutamate           9.8         36           3
 F phenylalanine       1.4          5           1
 G glycine             4.3         16           3
 H histidine           2.7         10           1
 I isoleucine          6.2         23           1
 K lysine              8.4         31           2
 L leucine            12.2         45           2
 M methionine          4.1         15           1
 N asparagine          4.1         15           1
 P proline             1.1          4           1
 Q glutamine           9.2         34           2
 R arginine            7.6         28           2
 S serine              7.3         27           2
 T threonine           4.9         18           2
 V valine              3.8         14           1
 W tryptophan          0.3          1           1
 Y tyrosine            1.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC145773 
FAM81B                0.279   hypothetical protein LOC153643 
MYH15                 0.062   myosin, heavy polypeptide 15 
GOLGB1                0.051   golgi autoantigen, golgin subfamily b, macrogolgin ...
CGNL1                 0.051   cingulin-like 1 
GOLGA4                0.050   golgi autoantigen, golgin subfamily a, 4 
EEA1                  0.047   early endosome antigen 1, 162kD 
MYH7                  0.047   myosin, heavy chain 7, cardiac muscle, beta 
CENPE                 0.044   centromere protein E 
CENPF                 0.043   centromere protein F 
PCNT                  0.040   pericentrin 
MYH3                  0.040   myosin, heavy chain 3, skeletal muscle, embryonic [H...
LOC727832             0.038   golgi autoantigen, golgin subfamily a-like 
ERC1                  0.038   RAB6-interacting protein 2 isoform delta 
LOC100133220          0.038   PREDICTED: hypothetical protein 
AKAP9                 0.037   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.037   A-kinase anchor protein 9 isoform 3 
MYH10                 0.037   myosin, heavy polypeptide 10, non-muscle 
NUMA1                 0.037   nuclear mitotic apparatus protein 1 
MYH7B                 0.037   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
MYH6                  0.037   myosin heavy chain 6 
AZI1                  0.037   5-azacytidine induced 1 isoform b 
GOLGA2                0.037   Golgi autoantigen, golgin subfamily a, 2 
CEP110                0.037   centrosomal protein 110kDa 
CLIP1                 0.035   restin isoform a 
KTN1                  0.035   kinectin 1 isoform b 
MYH14                 0.035   myosin, heavy chain 14 isoform 1 
MYH14                 0.035   myosin, heavy chain 14 isoform 2 
MYH14                 0.035   myosin, heavy chain 14 isoform 3 
SMC3                  0.035   structural maintenance of chromosomes 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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