Guide to the Human Genome
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Name: C2CD3 Sequence: fasta or formatted (1963aa) NCBI GI: 148596944
Description:

C2 calcium-dependent domain containing 3

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7        111           3
 C cysteine            1.8         35           2
 D aspartate           4.1         81           2
 E glutamate           6.2        121           2
 F phenylalanine       4.0         79           2
 G glycine             5.5        107           3
 H histidine           3.1         60           3
 I isoleucine          4.4         86           3
 K lysine              5.3        104           2
 L leucine            10.6        209           3
 M methionine          1.5         30           1
 N asparagine          3.6         70           2
 P proline             6.5        128           3
 Q glutamine           5.3        105           3
 R arginine            5.3        104           2
 S serine             10.7        211           2
 T threonine           6.6        130           3
 V valine              6.7        131           2
 W tryptophan          1.1         21           2
 Y tyrosine            2.0         40           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   C2 calcium-dependent domain containing 3 
MUC12                 0.004   PREDICTED: mucin 12 
PAXIP1                0.004   PAX interacting protein 1 
CD2AP                 0.004   CD2-associated protein 
TNS1                  0.003   tensin 
CRAMP1L               0.002   Crm, cramped-like 
LOC100130716          0.002   PREDICTED: similar to mucin 11 
LOC100133714          0.002   PREDICTED: similar to Mucin-12, partial 
MUC12                 0.002   PREDICTED: mucin 12 
SSFA2                 0.002   sperm specific antigen 2 isoform 1 
SSFA2                 0.002   sperm specific antigen 2 isoform 2 
MUC12                 0.002   PREDICTED: mucin 12, cell surface associated 
POTEF                 0.002   prostate, ovary, testis expressed protein on chromo...
PPP1R13B              0.002   apoptosis-stimulating protein of p53, 1 
ZNF407                0.002   zinc finger protein 407 isoform 3 
ZNF407                0.002   zinc finger protein 407 isoform 2 
MUC16                 0.002   mucin 16 
HMCN1                 0.002   hemicentin 1 
PCDH15                0.002   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.002   protocadherin 15 isoform CD1-9 precursor 
PCDH15                0.002   protocadherin 15 isoform CD1-6 precursor 
PCDH15                0.002   protocadherin 15 isoform CD1-2 precursor 
PCDH15                0.002   protocadherin 15 isoform CD1-1 precursor 
ZNF407                0.002   zinc finger protein 407 isoform 1 
HECW2                 0.002   HECT, C2 and WW domain containing E3 ubiquitin prote...
ZNF827                0.002   zinc finger protein 827 
MAP1B                 0.002   microtubule-associated protein 1B 
TRIM50                0.002   tripartite motif protein 50A 
TAT                   0.002   tyrosine aminotransferase 
FAM161A               0.002   hypothetical protein LOC84140 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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